CX299858

Overview
NameCX299858
Unique NameCX299858
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299858 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.225e-16
Identity = 52/104 (50.00%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   10 GMEVAEIDGAPRMVRINYFY*ILCTSVLFLIIRLNGGFC*FNLNLMILQGPTFGAMMISGQKAAHLALKALGQPNAIDGTFSEVTEVQPEFVLAATENSEIVDA 321
            GMEVAEIDGAPRM                                    GPTFGAMMISGQKAAHLALK+LGQPNA+DGT+  V  V PE +LAA +++E  DA
Sbjct:  291 GMEVAEIDGAPRM------------------------------------GPTFGAMMISGQKAAHLALKSLGQPNALDGTY--VGGVHPELILAAADSAETADA 356          
BLAST of CX299858 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.564e-16
Identity = 51/104 (49.04%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   10 GMEVAEIDGAPRMVRINYFY*ILCTSVLFLIIRLNGGFC*FNLNLMILQGPTFGAMMISGQKAAHLALKALGQPNAIDGTFSEVTEVQPEFVLAATENSEIVDA 321
            GMEVAEIDGAPRM                                    GPTFGAMMISGQKAAHLALKALG PNA+DG++  V  + PE +LAA +++EI DA
Sbjct:  287 GMEVAEIDGAPRM------------------------------------GPTFGAMMISGQKAAHLALKALGLPNALDGSY--VGGIHPELILAAADSAEIADA 352          
BLAST of CX299858 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.655e-16
Identity = 50/104 (48.08%), Postives = 58/104 (55.77%), Query Frame = 1
Query:   10 GMEVAEIDGAPRMVRINYFY*ILCTSVLFLIIRLNGGFC*FNLNLMILQGPTFGAMMISGQKAAHLALKALGQPNAIDGTFSEVTEVQPEFVLAATENSEIVDA 321
            GMEVAEIDGAPRM                                    GPTFGAMMISGQKAAHLALKALG+PNA+DGT  EV+    E  + A+++ E+VDA
Sbjct:  287 GMEVAEIDGAPRM------------------------------------GPTFGAMMISGQKAAHLALKALGRPNAVDGTIPEVSPALREEFVIASKDDEVVDA 354          
BLAST of CX299858 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.941e-15
Identity = 52/104 (50.00%), Postives = 56/104 (53.85%), Query Frame = 1
Query:   10 GMEVAEIDGAPRMVRINYFY*ILCTSVLFLIIRLNGGFC*FNLNLMILQGPTFGAMMISGQKAAHLALKALGQPNAIDGTFSEVTEVQPEFVLAATENSEIVDA 321
            GMEVAEIDGAPRM                                    GPTFGAMMISGQKA  LALKALG PNAIDGT   V  + PE VLAA +++E VDA
Sbjct:  284 GMEVAEIDGAPRM------------------------------------GPTFGAMMISGQKAGQLALKALGLPNAIDGTL--VGNLSPELVLAAADSAETVDA 349          
BLAST of CX299858 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.690e-14
Identity = 49/104 (47.12%), Postives = 56/104 (53.85%), Query Frame = 1
Query:   10 GMEVAEIDGAPRMVRINYFY*ILCTSVLFLIIRLNGGFC*FNLNLMILQGPTFGAMMISGQKAAHLALKALGQPNAIDGTFSEVTEVQPEFVLAATENSEIVDA 321
            GMEVAEIDGAPRM                                    GPTFGAMMISGQKAAHLALKALG+PNA+DGT S       E ++ A ++ E+VDA
Sbjct:  290 GMEVAEIDGAPRM------------------------------------GPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLR---EELMIAYKDDEVVDA 354          
The following BLAST results are available for this feature:
BLAST of CX299858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
THI4_CITSI1.225e-1650.00Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL3.564e-1649.04Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI42_MAIZE4.655e-1648.08Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI4_ARATH3.941e-1550.00Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE5.690e-1447.12Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
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Properties
Property NameValue
Genbank descriptionC07003C08SK NTLeaf1 Citrus clementina cDNA clone C07003C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299858 ID=CX299858; Name=CX299858; organism=Citrus clementina; type=EST; length=516bp
CTGCAGGCGGGCATGGAAGTCGCAGAGATCGACGGTGCCCCTAGAATGGT
GAGAATTAATTATTTTTATTAAATTTTGTGTACGTCTGTTCTGTTTTTAA
TTATACGATTAAATGGGGGATTTTGTTGATTTAATTTAAATCTGATGATC
CTGCAGGGACCTACATTCGGGGCCATGATGATTTCAGGGCAGAAGGCAGC
CCATTTGGCGTTGAAGGCATTGGGGCAGCCGAATGCGATAGATGGGACAT
TCAGTGAAGTTACGGAAGTACAGCCAGAGTTTGTCCTTGCGGCCACTGAG
AACAGCGAGATTGTTGATGCTTAAAAATTATAAAATCTGAGAATTATGTA
CATTTTGATGAGAATTCAAAATCAACAATAAACCCAAAAAAAATAAAAAT
TGTAACTACGATCGGCCACTAAATATCGTGGGGATGGAGAAATTTGGTGT
AATTTTTCTTCGATTTTTGTTGAGTTCCAAATTAATGAATTCAACAGCTA
AAAAAAAAAAAAAAAA
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