CX299884

Overview
NameCX299884
Unique NameCX299884
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length498
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299884 vs. ExPASy Swiss-Prot
Match: NUD15_ARATH (Nudix hydrolase 15, mitochondrial OS=Arabidopsis thaliana GN=NUDT15 PE=1 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 3.662e-52
Identity = 95/122 (77.87%), Postives = 107/122 (87.70%), Query Frame = 2
Query:    2 LDPSLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGILIRAASVVYQKPPAFIEQNPKFKFP 367
            LDPSLV+VVT LEPFLSKHLLRV+PVIGIL +K  F P PNP EVE VFDAPLEMF+KDENRR EEREWMGEK+L+H+FDY   +K Y+IWGLTAGILIRAASV Y++PPAFIEQ PKFK+P
Sbjct:  162 LDPSLVDVVTSLEPFLSKHLLRVIPVIGILRDKNKFNPIPNPGEVEAVFDAPLEMFLKDENRRSEEREWMGEKYLIHYFDYRTGDKDYMIWGLTAGILIRAASVTYERPPAFIEQCPKFKYP 283          
BLAST of CX299884 vs. ExPASy Swiss-Prot
Match: NUD22_ARATH (Nudix hydrolase 22, chloroplastic OS=Arabidopsis thaliana GN=NUDT22 PE=2 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 2.079e-47
Identity = 88/121 (72.73%), Postives = 103/121 (85.12%), Query Frame = 2
Query:    2 LDPSLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKKYLIWGLTAGILIRAASVVYQKPPAFIEQNPKFKF 364
            LDPSLV+VV  LEPFLS+HLLRV+PV+GIL ++KAF PTPNPAEVE V DAP EMF+KDENRR EE +WMGEK L+HFFDY+  +  Y+IWGLTA ILIRAA+VVYQ+PPAFIEQ P  K+
Sbjct:  136 LDPSLVDVVAFLEPFLSQHLLRVIPVVGILWDRKAFNPTPNPAEVEAVLDAPFEMFLKDENRRSEEFDWMGEKHLVHFFDYKTGDSDYVIWGLTARILIRAATVVYQRPPAFIEQKPNLKY 256          
BLAST of CX299884 vs. ExPASy Swiss-Prot
Match: NUD11_ARATH (Nudix hydrolase 11 OS=Arabidopsis thaliana GN=NUDT11 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 2.548e-37
Identity = 75/121 (61.98%), Postives = 94/121 (77.69%), Query Frame = 2
Query:    2 LDPSLVEVVTVLEPFLSKHLLRVVPVIGILSNKKAFTPTPNPAEVEEVFDAPLEMFIKDENRRDEEREWMGEKFLLHFFDYEYENKK--YLIWGLTAGILIRAASVVYQKPPAFIEQNPKF 358
            LDPSLV +++VLEPF++K  + V PVIG L +KKAF   PNPAEVEE+FD PLEMF+KD NRR EERE  GE++LL +FDY  E+K+  ++IW LTAGILIR AS+VYQ+ P F E+ P F
Sbjct:   97 LDPSLVTIISVLEPFVNKKGMSVAPVIGFLHDKKAFKQLPNPAEVEEIFDVPLEMFLKDRNRRAEEREHEGERYLLQYFDYYSEDKERSFIIWALTAGILIRVASIVYQRLPEFQERKPSF 217          
The following BLAST results are available for this feature:
BLAST of CX299884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NUD15_ARATH3.662e-5277.87Nudix hydrolase 15, mitochondrial OS=Arabidopsis t... [more]
NUD22_ARATH2.079e-4772.73Nudix hydrolase 22, chloroplastic OS=Arabidopsis t... [more]
NUD11_ARATH2.548e-3761.98Nudix hydrolase 11 OS=Arabidopsis thaliana GN=NUDT... [more]
back to top
Properties
Property NameValue
Genbank descriptionC07003F01SK NTLeaf1 Citrus clementina cDNA clone C07003F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299884 ID=CX299884; Name=CX299884; organism=Citrus clementina; type=EST; length=498bp
GTTGGATCCTTCGCTTGTGGAAGTTGTCACTGTTCTTGAACCATTCTTGT
CAAAGCACCTCCTTAGAGTAGTTCCTGTTATAGGCATACTTAGCAATAAA
AAGGCATTCACGCCTACTCCCAATCCTGCTGAAGTGGAAGAAGTGTTTGA
TGCTCCCTTGGAAATGTTTATCAAGGATGAAAACCGGAGAGATGAGGAGA
GAGAATGGATGGGAGAGAAATTTCTGCTTCACTTCTTTGACTATGAATAT
GAAAACAAGAAGTACTTGATTTGGGGTTTAACTGCCGGCATTCTGATTAG
AGCTGCATCAGTGGTCTACCAGAAGCCACCTGCATTTATAGAGCAAAACC
CAAAGTTCAAGTTTCCGACTGTTATAAACAAAGATACTATAGTCCCTTGA
AAGAATTTGTAGAAACATTGTTGGCTTGTACTCCAAATAAATATCTGCAA
TAAATCCACCATGACCCAGATTTATTGAATGAAAAAAAAAAAAAAAAA
back to top