CX299887

Overview
NameCX299887
Unique NameCX299887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length415
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX299887_ssr1 microsatellite CX299887_ssr1:1..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14378 contig Ccv1_Contig14378:296..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299887 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.678e-13
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = -2
Query:  274 QTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCYKVR 414
            QTACNCLK  AGSI  +NPNNA GLP  CGV++PYKIS ST+C  V+
Sbjct:   69 QTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CX299887 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.777e-12
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = -2
Query:  274 QTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCYKVR 414
            + ACNCLKQ +GSIP +NPNNA  LP  CGV++PYKIS ST+C  V+
Sbjct:   45 RAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of CX299887 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.032e-12
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = -2
Query:  274 QTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCYKVR 414
            +TACNCLKQ +GSI  +NPNNA  LP  CGV+IPYKIS ST+C  V+
Sbjct:   45 RTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CX299887 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.172e-12
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = -2
Query:  274 QTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCYKVR 414
            Q ACNCLKQ + S+P +NPNNA  LP  CGV IPYKIS ST+C  V+
Sbjct:   45 QAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of CX299887 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.754e-12
Identity = 32/47 (68.09%), Postives = 35/47 (74.47%), Query Frame = -2
Query:  274 QTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCYKVR 414
            Q ACNCLK AAGSI  LN NNA  LP  CGV+IPYKIS ST+C  V+
Sbjct:   63 QAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of CX299887 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.821e-12
Identity = 32/47 (68.09%), Postives = 34/47 (72.34%), Query Frame = -2
Query:  274 QTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCYKVR 414
            Q ACNCLK AAGSI  LN NNA  LP  CGV IPYKIS ST+C  V+
Sbjct:   71 QAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of CX299887 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.152e-11
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = -2
Query:  274 QTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCYKVR 414
            Q ACNCLKQ + S+P +NPNNA  LP  CGV+IPY+IS ST+C  V+
Sbjct:   71 QAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CX299887 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.505e-11
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = -2
Query:  274 QTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCYKVR 414
            QTACNCLKQ + S+P +N NNA  LP  CGV++PYKIS ST+C  V+
Sbjct:   71 QTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CX299887 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.505e-11
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = -2
Query:  274 QTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCYKVR 414
            Q ACNCLK AAGSI  LN NNA  LP  CGV+IPYKIS +T+C  V+
Sbjct:   71 QAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
BLAST of CX299887 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.378e-11
Identity = 31/47 (65.96%), Postives = 34/47 (72.34%), Query Frame = -2
Query:  274 QTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCYKVR 414
            Q ACNCLK AAGSI  LN NNA  LP  C V+IPYKIS ST+C  +R
Sbjct:   69 QAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
The following BLAST results are available for this feature:
BLAST of CX299887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
NLTP_MALDO4.678e-1368.09Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUDO1.777e-1263.83Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP1_PRUAR3.032e-1265.96Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP1_PRUPE5.172e-1263.83Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP4_LENCU6.754e-1268.09Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP6_LENCU8.821e-1268.09Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP1_PRUDU1.152e-1161.70Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_PRUAV1.505e-1161.70Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP2_LENCU1.505e-1165.96Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP_CICAR4.378e-1165.96Non-specific lipid-transfer protein OS=Cicer ariet... [more]

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Properties
Property NameValue
Genbank descriptionC07003F04SK NTLeaf1 Citrus clementina cDNA clone C07003F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299887 ID=CX299887; Name=CX299887; organism=Citrus clementina; type=EST; length=415bp
AGAGAGAGAGAGAGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTGAA
CACAAGGCAAGATTTCATTTAATAAACAGAATAGACACAAACTGACGATG
ACATGAAAAGCAAAGACAATAAGACACAACATGAAACGAGGGCGGGAACG
AGACTCGCAGTACAAAGTGTAGAGAGAGACTCATAATTCGGACACAAAAA
TGTCCTTATTATTATACATTTATTCTACTCCGTCAACTTAAATATGAAAA
TCAACAGCCCAGATTCCTGTTCACCGGACCTTATAGCAGTCAGTGGAGAT
GCTGATCTTGTAAGGAATGCTGACTCCACAAGCTCGTGGAAGACCAACAG
CATTATTAGGGTTGAGGTTAGGGATTGATCCGGCGGCTTGCTTCAAGCAG
TTGCATGCAGTTTGG
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