CX299896

Overview
NameCX299896
Unique NameCX299896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length385
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299896 vs. ExPASy Swiss-Prot
Match: PPDK_MESCR (Pyruvate, phosphate dikinase, chloroplastic OS=Mesembryanthemum crystallinum GN=PPD PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.724e-39
Identity = 79/82 (96.34%), Postives = 82/82 (100.00%), Query Frame = 3
Query:    3 VYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVPIARLAAAQV 248
            VYLSKGILQSDPFEVLDQKGVGQLIK+ATE+GR+ARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVPIARLAAAQV
Sbjct:  867 VYLSKGILQSDPFEVLDQKGVGQLIKLATEKGRSARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVPIARLAAAQV 948          
BLAST of CX299896 vs. ExPASy Swiss-Prot
Match: PPDK1_ARATH (Pyruvate, phosphate dikinase 1, chloroplastic OS=Arabidopsis thaliana GN=PPDK PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 7.241e-38
Identity = 75/84 (89.29%), Postives = 81/84 (96.43%), Query Frame = 3
Query:    3 VYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVPIARLAAAQVAV 254
            +YL+KGILQ DPFEVLDQ+GVGQLIK+ATE+GRAARPSLKVGICGEHGG+PSSV FFAEAGLDYVSCSPFRVPIARLAAAQV V
Sbjct:  879 IYLAKGILQHDPFEVLDQQGVGQLIKMATEKGRAARPSLKVGICGEHGGDPSSVGFFAEAGLDYVSCSPFRVPIARLAAAQVVV 962          
BLAST of CX299896 vs. ExPASy Swiss-Prot
Match: PPDK_FLAPR (Pyruvate, phosphate dikinase, chloroplastic OS=Flaveria pringlei GN=PPDK PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.973e-36
Identity = 73/84 (86.90%), Postives = 78/84 (92.86%), Query Frame = 3
Query:    3 VYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVPIARLAAAQVAV 254
            +YLS+GILQ DPFEVLDQKGVGQLIK+ATE+GRAA P+LKVGICGEHGGEPSSVAFF   GLDYVSCSPFRVPIARLAAAQV V
Sbjct:  873 IYLSQGILQHDPFEVLDQKGVGQLIKMATEKGRAANPNLKVGICGEHGGEPSSVAFFDGVGLDYVSCSPFRVPIARLAAAQVVV 956          
BLAST of CX299896 vs. ExPASy Swiss-Prot
Match: PPDK_FLABR (Pyruvate, phosphate dikinase, chloroplastic OS=Flaveria brownii GN=PPDK PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.973e-36
Identity = 73/84 (86.90%), Postives = 78/84 (92.86%), Query Frame = 3
Query:    3 VYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVPIARLAAAQVAV 254
            +YLS+GILQ DPFEVLDQKGVGQLIK+ATE+GRAA P+LKVGICGEHGGEPSSVAFF   GLDYVSCSPFRVPIARLAAAQV V
Sbjct:  872 IYLSQGILQHDPFEVLDQKGVGQLIKMATEKGRAANPNLKVGICGEHGGEPSSVAFFDGVGLDYVSCSPFRVPIARLAAAQVVV 955          
BLAST of CX299896 vs. ExPASy Swiss-Prot
Match: PPDK1_ORYSJ (Pyruvate, phosphate dikinase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PPDK1 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.973e-36
Identity = 71/82 (86.59%), Postives = 79/82 (96.34%), Query Frame = 3
Query:    3 VYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVPIARLAAAQV 248
            +YLS+GILQ DPFEVLDQ+GVG+L+K+ATERGR ARP+LKVGICGEHGGEP SVAFFA+AGLDYVSCSPFRVPIARLAAAQV
Sbjct:  864 IYLSQGILQHDPFEVLDQRGVGELVKLATERGRKARPNLKVGICGEHGGEPLSVAFFAKAGLDYVSCSPFRVPIARLAAAQV 945          
BLAST of CX299896 vs. ExPASy Swiss-Prot
Match: PPDK_FLATR (Pyruvate, phosphate dikinase, chloroplastic OS=Flaveria trinervia GN=PPDK PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 8.852e-36
Identity = 72/84 (85.71%), Postives = 78/84 (92.86%), Query Frame = 3
Query:    3 VYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVPIARLAAAQVAV 254
            +YL++GILQ DPFEV+DQKGVGQLIK+ATE+GRAA PSLKVGICGEHGGEPSSVAFF   GLDYVSCSPFRVPIARLAAAQV V
Sbjct:  870 IYLAQGILQHDPFEVIDQKGVGQLIKMATEKGRAANPSLKVGICGEHGGEPSSVAFFDGVGLDYVSCSPFRVPIARLAAAQVIV 953          
BLAST of CX299896 vs. ExPASy Swiss-Prot
Match: PPDK1_MAIZE (Pyruvate, phosphate dikinase 1, chloroplastic OS=Zea mays GN=PPDK1 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 1.156e-35
Identity = 71/84 (84.52%), Postives = 80/84 (95.24%), Query Frame = 3
Query:    3 VYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVPIARLAAAQVAV 254
            V+L++GILQ DPFEVLDQ+GVG+L+K ATERGR ARP+LKVGICGEHGGEPSSVAFFA+AGLD+VSCSPFRVPIARLAAAQV V
Sbjct:  864 VHLAQGILQHDPFEVLDQRGVGELVKFATERGRKARPNLKVGICGEHGGEPSSVAFFAKAGLDFVSCSPFRVPIARLAAAQVLV 947          
BLAST of CX299896 vs. ExPASy Swiss-Prot
Match: PPDK_FLABI (Pyruvate, phosphate dikinase, chloroplastic OS=Flaveria bidentis PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.972e-35
Identity = 71/84 (84.52%), Postives = 78/84 (92.86%), Query Frame = 3
Query:    3 VYLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVPIARLAAAQVAV 254
            +YL++GILQ DPFEV+DQKGVGQLIK+ATE+GRAA P+LKVGICGEHGGEPSSVAFF   GLDYVSCSPFRVPIARLAAAQV V
Sbjct:  870 IYLAQGILQHDPFEVIDQKGVGQLIKMATEKGRAANPNLKVGICGEHGGEPSSVAFFDGVGLDYVSCSPFRVPIARLAAAQVIV 953          
BLAST of CX299896 vs. ExPASy Swiss-Prot
Match: PPDK2_ORYSJ (Pyruvate, phosphate dikinase 2 OS=Oryza sativa subsp. japonica GN=PPDK2 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.738e-35
Identity = 69/81 (85.19%), Postives = 76/81 (93.83%), Query Frame = 3
Query:    6 YLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVPIARLAAAQV 248
            YLSKGILQ+DPFEV DQKGVG+L+K+A ERGR ARP L+VGICGEHGGEPSSVAFFA+ GL+YVSCSPFRVPIARLAAAQV
Sbjct:  805 YLSKGILQNDPFEVFDQKGVGELVKVAVERGRKARPDLEVGICGEHGGEPSSVAFFAKVGLNYVSCSPFRVPIARLAAAQV 885          
BLAST of CX299896 vs. ExPASy Swiss-Prot
Match: PPDK_RHIME (Pyruvate, phosphate dikinase OS=Rhizobium meliloti GN=ppdK PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 3.372e-27
Identity = 56/83 (67.47%), Postives = 67/83 (80.72%), Query Frame = 3
Query:    6 YLSKGILQSDPFEVLDQKGVGQLIKIATERGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVPIARLAAAQVAV 254
            Y  KGI++ DPF  LD +GVG+LI+IA ERGR  +  LK+GICGEHGG+P+S+ F  EAGLDYVSCSPFRVPIARLAAAQ  +
Sbjct:  802 YQQKGIIEQDPFVSLDFEGVGELIQIAAERGRRTKNGLKLGICGEHGGDPASIRFCEEAGLDYVSCSPFRVPIARLAAAQATI 884          
The following BLAST results are available for this feature:
BLAST of CX299896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PPDK_MESCR1.724e-3996.34Pyruvate, phosphate dikinase, chloroplastic OS=Mes... [more]
PPDK1_ARATH7.241e-3889.29Pyruvate, phosphate dikinase 1, chloroplastic OS=A... [more]
PPDK_FLAPR3.973e-3686.90Pyruvate, phosphate dikinase, chloroplastic OS=Fla... [more]
PPDK_FLABR3.973e-3686.90Pyruvate, phosphate dikinase, chloroplastic OS=Fla... [more]
PPDK1_ORYSJ3.973e-3686.59Pyruvate, phosphate dikinase 1, chloroplastic OS=O... [more]
PPDK_FLATR8.852e-3685.71Pyruvate, phosphate dikinase, chloroplastic OS=Fla... [more]
PPDK1_MAIZE1.156e-3584.52Pyruvate, phosphate dikinase 1, chloroplastic OS=Z... [more]
PPDK_FLABI1.972e-3584.52Pyruvate, phosphate dikinase, chloroplastic OS=Fla... [more]
PPDK2_ORYSJ5.738e-3585.19Pyruvate, phosphate dikinase 2 OS=Oryza sativa sub... [more]
PPDK_RHIME3.372e-2767.47Pyruvate, phosphate dikinase OS=Rhizobium meliloti... [more]

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Properties
Property NameValue
Genbank descriptionC07003G02SK NTLeaf1 Citrus clementina cDNA clone C07003G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299896 ID=CX299896; Name=CX299896; organism=Citrus clementina; type=EST; length=385bp
CTGTATACCTATCCAAAGGCATTCTGCAAAGTGACCCATTCGAGGTTCTT
GATCAGAAAGGCGTAGGCCAACTCATCAAGATTGCCACAGAAAGGGGCCG
TGCGGCTAGGCCTAGCTTAAAGGTGGGGATATGTGGAGAGCATGGGGGAG
AGCCTTCTTCAGTTGCATTTTTTGCAGAAGCTGGACTTGACTATGTTTCA
TGTTCTCCATTCAGGGTTCCAATTGCAAGGCTAGCAGCTGCTCAAGTCGC
CGTGTGAACGATATTTTCAGCTGACTCGCTGCATTTGTAAATAATTTGCT
TCGCAGGCGGCACATACAAATAATAACTACTATAAAGAACTGCATATAAG
AATTGCTAAAAGAAAGTTAAAAAAAAAAAAAAAAA
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