CX299907

Overview
NameCX299907
Unique NameCX299907
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length571
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6125 contig Ccv1_Contig6125:708..1278. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299907 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.451e-16
Identity = 62/200 (31.00%), Postives = 94/200 (47.00%), Query Frame = 2
Query:    2 LAQTQNLYQSTFSYCLPSFKALSFSGSLRLGPI------GQPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAG-TIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGFDTCYSVP-----IVAPTITLMFSGMNVTLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQN 565
            L+    L  + FSYC+    + S   +L LG +      G P     T L+++ +  + YY+ L  + VG   + I P A   N   G G  IIDSGT  T  V  AY +VR  F  ++   +   S  GFD C+  P     +  PT  + F G ++ LP +N  I S +  + CLAM ++       +++  N+QQQN
Sbjct:  226 LSLPSQLDVTKFSYCMTPIGS-STPSNLLLGSLANSVTAGSPN----TTLIQSSQIPTFYYITLNGLSVGSTRLPIDPSAFALNSNNGTGGIIIDSGTTLTYFVNNAYQSVRQEFISQINLPVVNGSSSGFDLCFQTPSDPSNLQIPTFVMHFDGGDLELPSENYFI-SPSNGLICLAMGSSSQG----MSIFGNIQQQN 415          
BLAST of CX299907 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.713e-15
Identity = 60/183 (32.79%), Postives = 86/183 (46.99%), Query Frame = 2
Query:   35 FSYCLPSFKALSFSGSLRLGPI--GQPKRIKYTPLLKNPRRSSLYYVNLLAIRVGRRVVDIPPGALQFNPTTGAGTIIDSGTVFTRLVAPAYTAVRDVFRRRVGSNLTVTSLGGFDTCYSVP-----IVAPTITLMFSGMNVTLPQDNLLIHSTAGSITCLAMAAAPDNVNSVLNVIANMQQQ 562
            FSYC+ S+ + S S +L LG    G P+    T L+ +    + YY+ L  I VG   + IP    Q       G IIDSGT  T L   AY AV   F  ++       S  G  TC+  P     +  P I++ F G  + L + N+LI S A  + CLAM ++       +++  N+QQQ
Sbjct:  238 FSYCMTSYGSSSPS-TLALGSAASGVPEGSPSTTLIHSSLNPTYYYITLQGITVGGDNLGIPSSTFQLQDDGTGGMIIDSGTTLTYLPQDAYNAVAQAFTDQINLPTVDESSSGLSTCFQQPSDGSTVQVPEISMQFDGGVLNLGEQNILI-SPAEGVICLAMGSSS---QLGISIFGNIQQQ 415          
The following BLAST results are available for this feature:
BLAST of CX299907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NEP1_NEPGR3.451e-1631.00Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
NEP2_NEPGR1.713e-1532.79Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
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Properties
Property NameValue
Genbank descriptionC07003H03SK NTLeaf1 Citrus clementina cDNA clone C07003H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299907 ID=CX299907; Name=CX299907; organism=Citrus clementina; type=EST; length=571bp
TTTGGCACAAACACAGAACCTCTATCAGTCCACTTTTTCTTACTGTTTGC
CCAGCTTCAAGGCACTTAGCTTTTCTGGGTCATTAAGATTAGGACCCATT
GGTCAGCCCAAGCGGATTAAGTATACACCATTGCTTAAAAACCCAAGAAG
ATCATCACTTTACTATGTTAATTTGTTGGCCATTAGGGTTGGCAGAAGAG
TTGTTGATATCCCACCTGGTGCCTTACAGTTCAATCCCACAACCGGCGCT
GGCACTATTATTGATTCTGGCACAGTTTTTACCAGACTGGTGGCGCCAGC
TTACACCGCAGTGAGAGACGTGTTCCGTAGACGCGTAGGGAGTAACTTAA
CAGTGACATCCCTAGGCGGATTCGACACGTGCTACTCGGTCCCAATCGTT
GCACCGACAATCACGTTGATGTTCTCAGGCATGAACGTGACTCTACCACA
AGACAACCTTCTAATCCACAGCACTGCAGGGAGCATCACATGCTTGGCCA
TGGCTGCAGCTCCAGACAACGTCAACTCAGTGCTTAATGTCATTGCCAAT
ATGCAGCAACAAAACCACAGA
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