CX299908

Overview
NameCX299908
Unique NameCX299908
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length378
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPR4_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.154e-37
Identity = 72/93 (77.42%), Postives = 85/93 (91.40%), Query Frame = 1
Query:    1 TIMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPEDHGVVSDLKKAQLI 279
            TIMIKQPI R +GQATDVEIARKE+K++K E+VKLY+KH GK+PEQIEAD++RPKYFSP+EAVEYGIIDKV+Y E+  +D GVVSDLKKAQLI
Sbjct:  213 TIMIKQPIARFQGQATDVEIARKEIKHIKTEMVKLYSKHIGKSPEQIEADMKRPKYFSPTEAVEYGIIDKVVYNERGSQDRGVVSDLKKAQLI 305          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_YEREN (ATP-dependent Clp protease proteolytic subunit OS=Yersinia enterocolitica GN=clpP PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.926e-14
Identity = 36/70 (51.43%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 213
            +MI QP+G  +GQATD+EI  KE+  VK+ + +L AKH GK+ E+IE D  R ++ S  EAVEYG++D V
Sbjct:  133 VMIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAKHTGKSLEEIERDTERDRFLSADEAVEYGLVDSV 202          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_YERE8 (ATP-dependent Clp protease proteolytic subunit OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=clpP PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.926e-14
Identity = 36/70 (51.43%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 213
            +MI QP+G  +GQATD+EI  KE+  VK+ + +L AKH GK+ E+IE D  R ++ S  EAVEYG++D V
Sbjct:  133 VMIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAKHTGKSLEEIERDTERDRFLSADEAVEYGLVDSV 202          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_PROMH (ATP-dependent Clp protease proteolytic subunit OS=Proteus mirabilis (strain HI4320) GN=clpP PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.516e-14
Identity = 36/76 (47.37%), Postives = 57/76 (75.00%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKS 231
            +MI QP+G  +GQATD++I  +E+  VK+ + +L A+H GK+ E+IE D  R ++ S +EA+EYG++DKV YT++S
Sbjct:  133 VMIHQPLGGYQGQATDIQIHAQEILKVKSRMNELMAQHTGKSIEEIERDTERDRFLSANEALEYGLVDKV-YTQRS 207          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_ERWCT (ATP-dependent Clp protease proteolytic subunit OS=Erwinia carotovora subsp. atroseptica GN=clpP PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.516e-14
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 213
            +MI QP+G  +GQATD+EI  KE+  VKA++ +L AKH G+  E IE D  R ++ S SEAVEYG++D V
Sbjct:  133 VMIHQPLGGFQGQATDIEIHAKEILKVKAKMNELMAKHTGQPLEAIERDTERDRFLSASEAVEYGLVDSV 202          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_AZOSE (ATP-dependent Clp protease proteolytic subunit OS=Azoarcus sp. (strain EbN1) GN=clpP PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.291e-14
Identity = 35/71 (49.30%), Postives = 53/71 (74.65%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 216
            +MI QP+G  +GQA+D+EI  +E+  ++A+L ++ AKH G+  EQIE D  R ++ S ++AVEYGI+DKVL
Sbjct:  136 VMIHQPLGGFQGQASDIEIHAREILGIRAKLNEMLAKHTGQPIEQIEKDTDRDRFMSAADAVEYGIVDKVL 206          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_LEGPL (ATP-dependent Clp protease proteolytic subunit OS=Legionella pneumophila (strain Lens) GN=clpP PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.249e-13
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLY 219
            +MI QP+G   GQATD+EI  +E   V+  L  + AKH  KTP+QI  D  R  + S ++A+EYG+IDKVLY
Sbjct:  132 VMIHQPLGGYRGQATDIEIHARETLAVRERLNNIMAKHTKKTPDQIMRDTERDNFMSATQAMEYGLIDKVLY 203          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_LEGPH (ATP-dependent Clp protease proteolytic subunit OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=clpP PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.249e-13
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLY 219
            +MI QP+G   GQATD+EI  +E   V+  L  + AKH  KTP+QI  D  R  + S ++A+EYG+IDKVLY
Sbjct:  132 VMIHQPLGGYRGQATDIEIHARETLAVRERLNNIMAKHTKKTPDQIMRDTERDNFMSATQAMEYGLIDKVLY 203          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_LEGPC (ATP-dependent Clp protease proteolytic subunit OS=Legionella pneumophila (strain Corby) GN=clpP PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.249e-13
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLY 219
            +MI QP+G   GQATD+EI  +E   V+  L  + AKH  KTP+QI  D  R  + S ++A+EYG+IDKVLY
Sbjct:  132 VMIHQPLGGYRGQATDIEIHARETLAVRERLNNIMAKHTKKTPDQIMRDTERDNFMSATQAMEYGLIDKVLY 203          
BLAST of CX299908 vs. ExPASy Swiss-Prot
Match: CLPP_LEGPA (ATP-dependent Clp protease proteolytic subunit OS=Legionella pneumophila (strain Paris) GN=clpP PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.249e-13
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    4 IMIKQPIGRIEGQATDVEIARKEMKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLY 219
            +MI QP+G   GQATD+EI  +E   V+  L  + AKH  KTP+QI  D  R  + S ++A+EYG+IDKVLY
Sbjct:  132 VMIHQPLGGYRGQATDIEIHARETLAVRERLNNIMAKHTKKTPDQIMRDTERDNFMSATQAMEYGLIDKVLY 203          
The following BLAST results are available for this feature:
BLAST of CX299908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
CLPR4_ARATH6.154e-3777.42ATP-dependent Clp protease proteolytic subunit-rel... [more]
CLPP_YEREN1.926e-1451.43ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_YERE81.926e-1451.43ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PROMH2.516e-1447.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ERWCT2.516e-1452.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_AZOSE4.291e-1449.30ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LEGPL1.249e-1350.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LEGPH1.249e-1350.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LEGPC1.249e-1350.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LEGPA1.249e-1350.00ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC07003H04SK NTLeaf1 Citrus clementina cDNA clone C07003H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299908 ID=CX299908; Name=CX299908; organism=Citrus clementina; type=EST; length=378bp
ACAATCATGATAAAGCAGCCAATTGGGAGGATTGAAGGTCAAGCAACAGA
TGTCGAAATTGCCAGAAAAGAAATGAAGAATGTGAAGGCAGAGTTGGTTA
AACTCTATGCAAAGCATTTTGGAAAAACTCCTGAGCAGATTGAGGCTGAC
ATAAGGCGTCCAAAATATTTTAGTCCCAGTGAGGCTGTTGAATACGGCAT
CATAGATAAGGTACTGTATACTGAAAAAAGCCCGGAAGACCATGGAGTTG
TTTCTGACCTGAAGAAGGCACAACTGATTTAACTGTAGGAAAACTCGGAC
TGGTGGTTTCTTGGAGTATTCAGGTAATGGCGATGCCAATCTCAATGCAT
TCGGCAAGAGGAGGGGAAGCAATATGGG
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