CX299911

Overview
NameCX299911
Unique NameCX299911
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length514
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9492 contig Ccv1_Contig9492:715..1228. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX299911 vs. ExPASy Swiss-Prot
Match: PER42_ARATH (Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 6.539e-55
Identity = 99/113 (87.61%), Postives = 106/113 (93.81%), Query Frame = 1
Query:    1 ALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLANKLH 339
            +LNPDHVPHMLHKCPD+IPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGL++VDHQLA DKRTRP VKKMAK Q YFFKEF+RAI +LSENNPLTG+KGEIRK CNLANK H
Sbjct:  218 SLNPDHVPHMLHKCPDSIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLLLVDHQLAHDKRTRPIVKKMAKDQAYFFKEFTRAIQILSENNPLTGSKGEIRKQCNLANKNH 330          
BLAST of CX299911 vs. ExPASy Swiss-Prot
Match: PER21_ARATH (Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 8.599e-31
Identity = 60/109 (55.05%), Postives = 79/109 (72.48%), Query Frame = 1
Query:    4 LNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 330
            L+P +  ++  +CP   PDP AV Y RNDR TPMV+DN YY+NI+ +KGL+++D +LATD RT P+V KMA   +YF ++FSR + LLSE NPLTG +GEIRK C   N
Sbjct:  219 LDPSYALYLKKRCPSPTPDPNAVLYSRNDRETPMVVDNMYYKNIMAHKGLLVIDDELATDPRTAPFVAKMAADNNYFHEQFSRGVRLLSETNPLTGDQGEIRKDCRYVN 327          
BLAST of CX299911 vs. ExPASy Swiss-Prot
Match: PER63_ARATH (Peroxidase 63 OS=Arabidopsis thaliana GN=PER63 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.128e-13
Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 1
Query:    7 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 330
            NP     +   C ++  DP    +  ND  TP   DN Y++NI    GL+  DH L +D RTRP+V+  A+ Q  FF +F+ A+  LS +  LTG +GEIR+ C+  N
Sbjct:  223 NPRFAVALKKACSNSKNDPTISVF--NDVMTPNKFDNMYFQNIPKGLGLLESDHGLFSDPRTRPFVELYARDQSRFFNDFAGAMQKLSLHGVLTGRRGEIRRRCDAIN 328          
BLAST of CX299911 vs. ExPASy Swiss-Prot
Match: PER31_ARATH (Peroxidase 31 OS=Arabidopsis thaliana GN=PER31 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.630e-13
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = 1
Query:    7 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 330
            NP     +   C +   DP    +  ND  TP   DN YY+N+    GL+  DH L +D RTR +V   AK+QD FFK+F++A+  LS     TG +GEIR+ C+  N
Sbjct:  211 NPRFAVALKKACANYPKDPTISVF--NDIMTPNKFDNMYYQNLKKGLGLLESDHGLYSDPRTRYFVDLYAKNQDLFFKDFAKAMQKLSLFGIQTGRRGEIRRRCDAIN 316          
BLAST of CX299911 vs. ExPASy Swiss-Prot
Match: PER29_ARATH (Peroxidase 29 OS=Arabidopsis thaliana GN=PER29 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.379e-12
Identity = 37/96 (38.54%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   40 CPDAIPDPKAVQ--YVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCN 321
            CP+  P  +A +  +V ND+ T ++ D  YY + +  +G + +D ++  D RTRP+V+  A  QD FF  FS A   LS    LTG +G IR VC+
Sbjct:  242 CPEFSPTSQAAEATFVPNDQ-TSVIFDTAYYDDAIAGRGNLRIDSEIGADPRTRPFVEAFAADQDRFFNAFSSAFVKLSSYKVLTGNEGVIRSVCD 336          
BLAST of CX299911 vs. ExPASy Swiss-Prot
Match: PER6_ARATH (Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.241e-12
Identity = 38/109 (34.86%), Postives = 57/109 (52.29%), Query Frame = 1
Query:    4 LNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 330
            +NP +   +   C +   D +   +  ND  TP   DN YY+N+    GL+  DH +A D RTR  V   A+ +  FF  F++A+  +SE N  TG  GE+R+ C+  N
Sbjct:  216 MNPKYAAELRKLCANYTNDEQMSAF--NDVFTPGKFDNMYYKNLKHGYGLLQSDHAIAFDNRTRSLVDLYAEDETAFFDAFAKAMEKVSEKNVKTGKLGEVRRRCDQYN 322          
BLAST of CX299911 vs. ExPASy Swiss-Prot
Match: PER72_ARATH (Peroxidase 72 OS=Arabidopsis thaliana GN=PER72 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.601e-11
Identity = 31/82 (37.80%), Postives = 55/82 (67.07%), Query Frame = 1
Query:   88 DRGTPMVLDNNYYRNILDNKGLMMVDHQLAT-DKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 330
            D  TP   DN+Y++N++  KGL+  D  L T +K+++  V+  A++Q+ FF++F++++  +   +PLTG KGEIR++C   N
Sbjct:  252 DFATPFKFDNHYFKNLIMYKGLLSSDEILFTKNKQSKELVELYAENQEAFFEQFAKSMVKMGNISPLTGAKGEIRRICRRVN 333          
BLAST of CX299911 vs. ExPASy Swiss-Prot
Match: PER15_ARATH (Peroxidase 15 OS=Arabidopsis thaliana GN=PER15 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.601e-11
Identity = 35/110 (31.82%), Postives = 64/110 (58.18%), Query Frame = 1
Query:    4 LNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQL-ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 330
            L   +  ++  +CP +  D    +   N  G     DN+Y++N+++N GL+  D  L ++++++R  VKK A+ Q+ FF++F+ ++  +   +PLTG+ GEIRK C   N
Sbjct:  230 LEQSYAANLRQRCPRSGGDQNLSELDINSAGR---FDNSYFKNLIENMGLLNSDEVLFSSNEQSRELVKKYAEDQEEFFEQFAESMIKMGNISPLTGSSGEIRKNCRKIN 336          
BLAST of CX299911 vs. ExPASy Swiss-Prot
Match: PER46_ARATH (Peroxidase 46 OS=Arabidopsis thaliana GN=PER46 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.397e-11
Identity = 37/110 (33.64%), Postives = 56/110 (50.91%), Query Frame = 1
Query:    1 ALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 330
            +L+  +   +++KC  +      V    ND  T  V DN YYRN+  +KGL   D  L  D RTR  V+++A  ++ FF+ +S +   LS      G  GEIR+ C+  N
Sbjct:  220 SLDNSYAETLMNKCSSSESSSLTVS---NDPETSAVFDNQYYRNLETHKGLFQTDSALMEDNRTRTMVEELASDEESFFQRWSESFVKLSMVGVRVGEDGEIRRSCSSVN 326          
BLAST of CX299911 vs. ExPASy Swiss-Prot
Match: PER18_ARATH (Peroxidase 18 OS=Arabidopsis thaliana GN=PER18 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.437e-11
Identity = 36/110 (32.73%), Postives = 57/110 (51.82%), Query Frame = 1
Query:    1 ALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 330
            +L+  +   +++KC  ++     V  V ND  T    DN YY+N+L +KGL   D  L  D RTR  V+ +A  Q+ FF  ++ +   +S      G +GEIR+ C+  N
Sbjct:  222 SLDNSYAQTLVNKCSSSLDPTTTV--VDNDPETSSTFDNQYYKNLLAHKGLFQTDSALMEDDRTRKIVEILANDQESFFDRWTESFLKMSLMGVRVGEEGEIRRSCSAVN 329          
The following BLAST results are available for this feature:
BLAST of CX299911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PER42_ARATH6.539e-5587.61Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=... [more]
PER21_ARATH8.599e-3155.05Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=... [more]
PER63_ARATH2.128e-1338.89Peroxidase 63 OS=Arabidopsis thaliana GN=PER63 PE=... [more]
PER31_ARATH3.630e-1339.81Peroxidase 31 OS=Arabidopsis thaliana GN=PER31 PE=... [more]
PER29_ARATH1.379e-1238.54Peroxidase 29 OS=Arabidopsis thaliana GN=PER29 PE=... [more]
PER6_ARATH5.241e-1234.86Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 ... [more]
PER72_ARATH2.601e-1137.80Peroxidase 72 OS=Arabidopsis thaliana GN=PER72 PE=... [more]
PER15_ARATH2.601e-1131.82Peroxidase 15 OS=Arabidopsis thaliana GN=PER15 PE=... [more]
PER46_ARATH3.397e-1133.64Peroxidase 46 OS=Arabidopsis thaliana GN=PER46 PE=... [more]
PER18_ARATH4.437e-1132.73Peroxidase 18 OS=Arabidopsis thaliana GN=PER18 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC07003H07SK NTLeaf1 Citrus clementina cDNA clone C07003H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299911 ID=CX299911; Name=CX299911; organism=Citrus clementina; type=EST; length=514bp
GCACTGAACCCTGACCATGTTCCGCATATGCTCCATAAGTGTCCTGATGC
AATCCCAGACCCCAAGGCTGTTCAGTATGTGAGGAATGACCGTGGCACAC
CCATGGTGCTGGACAACAACTACTATAGGAACATATTGGACAACAAGGGC
TTGATGATGGTTGATCATCAGCTAGCCACCGACAAGAGGACAAGACCTTA
TGTTAAGAAGATGGCCAAGAGTCAAGACTACTTCTTCAAGGAATTTTCAA
GAGCCATTACTCTCCTTTCTGAGAACAACCCTCTCACAGGTACAAAGGGT
GAGATCCGAAAGGTTTGCAATCTTGCCAACAAGCTCCACGACAAGTCCTA
GCTAGCTAACAGCTGTATTAGCTACAACAAGTTAATAGCTCCAAATTTTT
CTTCCTTGTTTCTTCTATGAGGAAGAAAAGAGTGTGAGATGAGCTCCCAA
TAAGATGGTTTTTCTAGATCGGTTTGTTTCCTGTGAGATGTTCGTATTAC
TGCTATTATGTTCC
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