CX299966

Overview
NameCX299966
Unique NameCX299966
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299966 vs. ExPASy Swiss-Prot
Match: PSBW_SPIOL (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.075e-29
Identity = 69/124 (55.65%), Postives = 77/124 (62.10%), Query Frame = 1
Query:   82 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKT--NVGXXXXXXXXXXXXXXXXXXXXLVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYA 447
            MA ITAS   S + R+ LVH   +  SSSP+LGLP+M  + KV CS+E KPS  E+ T  N                      LVDERMSTEGTGLPFGLSNNLLGWIL GVFGLIWALY  YA
Sbjct:    1 MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTTNKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYA 124          
BLAST of CX299966 vs. ExPASy Swiss-Prot
Match: PSBW_ARATH (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.472e-22
Identity = 66/123 (53.66%), Postives = 75/123 (60.98%), Query Frame = 1
Query:   82 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVK-GKVRCSMEEKPSKQESKTNVGXXXXXXXXXXXXXXXXXXXX-LVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPY 444
            MA+ TAS  T S  R  L+ KP+ VA S+PVLGLP M  K G VRCSME   +KQ + + +G                     LVDERMSTEGTGLPFGLSNNLLGWIL GVFGLIW  +  Y
Sbjct:    1 MASFTASASTVSAARPALLLKPT-VAISAPVLGLPPMGKKKGGVRCSME---TKQGNVSVMGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVY 119          
BLAST of CX299966 vs. ExPASy Swiss-Prot
Match: PSBW_ORYSJ (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.716e-15
Identity = 53/123 (43.09%), Postives = 64/123 (52.03%), Query Frame = 1
Query:   82 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKG--KVRCSMEEKPSKQESKTNVGXXXXXXXXXXXXXXXXXXXXLVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPY 444
            MA ++A+  TS + R+VL             LGLP M  +   +VRC+     SK+ +                         LVDERMSTEGTGL  GLSNNLLGWILLGVFGLIW+LY  Y
Sbjct:    1 MATVSAAAATSVVARAVLAGP----------LGLPQMRARRSERVRCNY----SKEAATPAAAVKGAGASLLAMAATAAPAMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIY 109          
The following BLAST results are available for this feature:
BLAST of CX299966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PSBW_SPIOL6.075e-2955.65Photosystem II reaction center W protein, chloropl... [more]
PSBW_ARATH2.472e-2253.66Photosystem II reaction center W protein, chloropl... [more]
PSBW_ORYSJ1.716e-1543.09Photosystem II reaction center W protein, chloropl... [more]
back to top
Properties
Property NameValue
Genbank descriptionC07004E08SK SaltLeaf1 Citrus clementina cDNA clone C07004E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299966 ID=CX299966; Name=CX299966; organism=Citrus clementina; type=EST; length=659bp
GAATTCGGCACGAGGCCCTGACCACAGCAAACATCTTTGTGCTCATTCTT
CACTCCATCTCGTCTTCCAACTCCAAGAAAAATGGCCGCCATCACTGCTA
GCGTAGGAACATCATCGATTACACGCTCGGTTCTTGTGCACAAGCCATCC
ATTGTAGCTTCATCATCCCCTGTTCTTGGATTGCCAGCAATGGCAGTGAA
GGGGAAAGTGAGATGTTCGATGGAGGAAAAGCCTTCAAAGCAAGAGAGCA
AAACAAACGTGGGAATGAGTGCGTCACTGCTAGCAGCAGCATGCGCAGCA
ACAATGTCAAGCCCAGCCATGGCTCTTGTTGATGAGAGAATGAGCACTGA
AGGAACAGGGCTTCCATTTGGTTTGAGCAACAACCTCCTTGGGTGGATTC
TGTTGGGTGTTTTTGGTCTCATCTGGGCCCTCTACATTCCTTACGCTTCC
AGTCTTGATGAAGATGAAGAGTCCGGATTGTCCCTCTGATAGTCTGAAGT
CTAAAGCCAAACCCCCTGTTGGTAGAAATGTAAAGAGTTTGGCCTTTTCC
CTTAATTTGTTTTAGTAAAATCTATCTTTTGTGTTTCTGTTTCTTGATTC
ATGTTTCCTCTCTGTGCAATGTTATTTTCTTTTTAATGCTTAAAAAAAAA
AAAAAAAAA
back to top