CX299976

Overview
NameCX299976
Unique NameCX299976
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: ALTA7_ALTAL (Minor allergen Alt a 7 OS=Alternaria alternata GN=ALTA7 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.831e-26
Identity = 61/129 (47.29%), Postives = 77/129 (59.69%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMF-KMDSIRGGSPYGAGVF-AGDGTREPSETELALAEHQGKYMAAVVKK 395
            DG LFG PTRYG   AQ K F+D TG  W++G   GK AG FVS           A T+++ L  HG ++VP+GY     M   +D + GGSP+GAG F AGDG+R+PSE EL +A+ QGK     V K
Sbjct:   73 DGILFGIPTRYGNFPAQFKTFWDKTGKQWQQGAFWGKYAGVFVSTGTLGGGQETTAITSMSTLVDHGFIYVPLGYKTAFSMLANLDEVHGGSPWGAGTFSAGDGSRQPSELELNIAQAQGKAFYEAVAK 201          
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: WRBA_DESMR (Flavoprotein wrbA OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=wrbA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.569e-25
Identity = 59/129 (45.74%), Postives = 77/129 (59.69%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFAG-DGTREPSETELALAEHQGKYMAAVVKKL 398
            D  +FG PTR+G M  QM+ F D+TG +W  G LVGKP G F S             + I  L HHGM+ V + Y+F AG  ++D + GGSPYGA   AG DG+R PSE EL  A  QG+++A V ++L
Sbjct:   74 DAIVFGTPTRFGNMCGQMRQFLDATGQIWMRGGLVGKPGGVFCSTATQHGGQETTLMSFIQTLLHHGMIVVGLPYSF-AGQMRLDEVTGGSPYGATTIAGGDGSRMPSENELDAARFQGRHIADVTRRL 201          
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: WRBA_ALHEH (Flavoprotein wrbA OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=wrbA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.569e-25
Identity = 59/129 (45.74%), Postives = 78/129 (60.47%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFAG-DGTREPSETELALAEHQGKYMAAVVKKL 398
            DG +FG PTR+G MA QM+ F D TG LW +GKL+GK    F S             +  T L HHGM+ V + Y+  A +  MD I GG+PYGA   AG DG+R+PSE EL +A  QG+++A + +KL
Sbjct:   70 DGIIFGSPTRFGNMAGQMRNFLDQTGGLWAQGKLIGKVGSVFTSTGSQHGGQETTLTSMQTTLMHHGMVIVGVPYSC-AALTNMDEITGGTPYGASTLAGPDGSRQPSENELTIARFQGRHVAEITQKL 197          
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: WRBA_AZOSB (Flavoprotein wrbA OS=Azoarcus sp. (strain BH72) GN=wrbA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 63/129 (48.84%), Postives = 75/129 (58.14%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFA-GDGTREPSETELALAEHQGKYMAAVVKKL 398
            D  +FG PTR+G MA+QM+ F D TG LW  GKLVGK    F S             +  T L HHGM+ V + YT  A    MD I GGSPYGA   A GDGTR+PSE ELA+A  QG ++A +  KL
Sbjct:   70 DAIIFGTPTRFGNMASQMRNFLDQTGGLWMSGKLVGKVGSVFASTATQHGGQETTITSFHTTLLHHGMVIVGLPYT-EARQMNMDEITGGSPYGATTLAKGDGTRQPSENELAMARFQGGHVAKIAAKL 197          
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: WRBA_SALTI (Flavoprotein wrbA OS=Salmonella typhi GN=wrbA PE=3 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 9.763e-25
Identity = 60/129 (46.51%), Postives = 79/129 (61.24%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFA-GDGTREPSETELALAEHQGKYMAAVVKKL 398
            D  +FG PTR+G M+ QM+ F D TG LW  G L GK  G F S             T  T LAHHGM+ VPIGY+    +F +  +RGG+PYGA   A GDG+R+PS+ EL++A +QG+Y+A +  KL
Sbjct:   70 DAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLGGVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIGYS-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: YCP4_YEAST (Flavoprotein-like protein YCP4 OS=Saccharomyces cerevisiae GN=YCP4 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.665e-24
Identity = 61/133 (45.86%), Postives = 78/133 (58.65%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFG-AGMFKMDSIRGGSPYGAGVFAG-DGTREPSETELALAEHQGKYMAAVVKKLCEA 407
            D FLFG PTR+G + AQ  AF+D TG LW +G L GK AG FVS               ++ LAHHG++F+P+GY    A +  ++ + GGSP+GAG  AG DG+R  S  EL +AE QGK      KKL  A
Sbjct:   71 DAFLFGVPTRFGNLPAQWSAFWDKTGGLWAKGSLNGKAAGIFVSTSSYGGGQESTVKACLSYLAHHGIIFLPLGYKNSFAELASIEEVHGGSPWGAGTLAGPDGSRTASPLELRIAEIQGKTFYETAKKLFPA 203          
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: WRBA_SHISS (Flavoprotein wrbA OS=Shigella sonnei (strain Ss046) GN=wrbA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.175e-24
Identity = 60/129 (46.51%), Postives = 78/129 (60.47%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFA-GDGTREPSETELALAEHQGKYMAAVVKKL 398
            D  +FG PTR+G M+ QM+ F D TG LW  G L GK A  F S             T  T LAHHGM+ VPIGY     +F +  +RGG+PYGA   A GDG+R+PS+ EL++A +QG+Y+A +  KL
Sbjct:   73 DAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 199          
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: WRBA_SHIFL (Flavoprotein wrbA OS=Shigella flexneri GN=wrbA PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.175e-24
Identity = 60/129 (46.51%), Postives = 78/129 (60.47%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFA-GDGTREPSETELALAEHQGKYMAAVVKKL 398
            D  +FG PTR+G M+ QM+ F D TG LW  G L GK A  F S             T  T LAHHGM+ VPIGY     +F +  +RGG+PYGA   A GDG+R+PS+ EL++A +QG+Y+A +  KL
Sbjct:   70 DAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: WRBA_SHIF8 (Flavoprotein wrbA OS=Shigella flexneri serotype 5b (strain 8401) GN=wrbA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.175e-24
Identity = 60/129 (46.51%), Postives = 78/129 (60.47%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFA-GDGTREPSETELALAEHQGKYMAAVVKKL 398
            D  +FG PTR+G M+ QM+ F D TG LW  G L GK A  F S             T  T LAHHGM+ VPIGY     +F +  +RGG+PYGA   A GDG+R+PS+ EL++A +QG+Y+A +  KL
Sbjct:   70 DAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
BLAST of CX299976 vs. ExPASy Swiss-Prot
Match: WRBA_SHIDS (Flavoprotein wrbA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=wrbA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.175e-24
Identity = 60/129 (46.51%), Postives = 78/129 (60.47%), Query Frame = 3
Query:   15 DGFLFGFPTRYGCMAAQMKAFFDSTGMLWKEGKLVGKPAGFFVSXXXXXXXXXXXAWTAITQLAHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFA-GDGTREPSETELALAEHQGKYMAAVVKKL 398
            D  +FG PTR+G M+ QM+ F D TG LW  G L GK A  F S             T  T LAHHGM+ VPIGY     +F +  +RGG+PYGA   A GDG+R+PS+ EL++A +QG+Y+A +  KL
Sbjct:   70 DAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITST-WTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKL 196          
The following BLAST results are available for this feature:
BLAST of CX299976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
ALTA7_ALTAL8.831e-2647.29Minor allergen Alt a 7 OS=Alternaria alternata GN=... [more]
WRBA_DESMR2.569e-2545.74Flavoprotein wrbA OS=Desulfovibrio magneticus (str... [more]
WRBA_ALHEH2.569e-2545.74Flavoprotein wrbA OS=Alkalilimnicola ehrlichei (st... [more]
WRBA_AZOSB5.724e-2548.84Flavoprotein wrbA OS=Azoarcus sp. (strain BH72) GN... [more]
WRBA_SALTI9.763e-2546.51Flavoprotein wrbA OS=Salmonella typhi GN=wrbA PE=3... [more]
YCP4_YEAST1.665e-2445.86Flavoprotein-like protein YCP4 OS=Saccharomyces ce... [more]
WRBA_SHISS2.175e-2446.51Flavoprotein wrbA OS=Shigella sonnei (strain Ss046... [more]
WRBA_SHIFL2.175e-2446.51Flavoprotein wrbA OS=Shigella flexneri GN=wrbA PE=... [more]
WRBA_SHIF82.175e-2446.51Flavoprotein wrbA OS=Shigella flexneri serotype 5b... [more]
WRBA_SHIDS2.175e-2446.51Flavoprotein wrbA OS=Shigella dysenteriae serotype... [more]

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Properties
Property NameValue
Genbank descriptionC07004F06SK SaltLeaf1 Citrus clementina cDNA clone C07004F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX299976 ID=CX299976; Name=CX299976; organism=Citrus clementina; type=EST; length=683bp
AATTCGGCACGAGGGACGGGTTCTTGTTTGGGTTTCCGACGAGGTATGGG
TGCATGGCGGCCCAAATGAAGGCTTTTTTCGACTCGACTGGCATGTTGTG
GAAAGAGGGTAAACTTGTCGGCAAACCCGCCGGTTTTTTTGTCAGCACTG
GCACTCAAGGTGGCGGTCAGGAAACCACTGCTTGGACTGCAATTACCCAG
TTGGCCCACCATGGAATGCTATTTGTTCCTATTGGGTACACCTTTGGAGC
CGGTATGTTCAAGATGGACTCTATTCGGGGGGGCTCTCCATATGGTGCTG
GTGTTTTCGCTGGTGATGGCACAAGAGAGCCAAGTGAAACAGAGCTGGCA
CTAGCAGAACATCAGGGCAAGTATATGGCAGCGGTAGTCAAAAAGCTTTG
CGAGGCTTAATCTTTTATGTCATTGTTCAGACCACATCGTTGTGATTGGA
GTTGTGTTTGCTTTGTGATTGAATTTGGCGTTTTATGTGTTGCCGTCATC
CATTCTTTCTTTCCACAATTCATTCTGTTGAAAAGATGTAAATGATATGA
AATTCTTCCATTATGCCTCCACAAATAAATCTGTGAGTCAGCGAGATGTT
TCTTTGTAAATCTTTATTTCTTAACGTGTAATTTATCAGTATTTTGATGT
AATAAATTTCTTTCTTGTCAAAAAAAAAAAAAA
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