CX300003

Overview
NameCX300003
Unique NameCX300003
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6637 contig Ccv1_Contig6637:350..835. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300003 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.301e-18
Identity = 45/63 (71.43%), Postives = 49/63 (77.78%), Query Frame = 3
Query:    3 KEGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 191
            KEGAK++RMERRVGKFMRKF LPENAN +AISAVCQDGVLTVTV            TIEVK+A
Sbjct:   93 KEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVTVQKLPPPEPKKPKTIEVKVA 155          
BLAST of CX300003 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.627e-17
Identity = 46/62 (74.19%), Postives = 48/62 (77.42%), Query Frame = 3
Query:    3 KEGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKI 188
            KEGAKYVRMERRVGK MRKFVLPENAN E I+AVCQDGVLTVTV+           TIEVKI
Sbjct:   93 KEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVLTVTVENVPPPEPKKPRTIEVKI 154          
BLAST of CX300003 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.774e-17
Identity = 44/63 (69.84%), Postives = 49/63 (77.78%), Query Frame = 3
Query:    3 KEGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 191
            KEGAKY+RMERRVGK MRKFVLPENAN +AISAVCQDGVL+VTV            TI+VK+A
Sbjct:   97 KEGAKYLRMERRVGKLMRKFVLPENANTDAISAVCQDGVLSVTVQKLPPPEPKKPRTIQVKVA 159          
BLAST of CX300003 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.377e-16
Identity = 43/63 (68.25%), Postives = 49/63 (77.78%), Query Frame = 3
Query:    3 KEGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 191
            K+G KY+RMERRVGKFMRKFVLPENANVEAI+AV QDGVL VTV+           T+EVK+A
Sbjct:  105 KDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDGVLQVTVEKLPPPEPKKPKTVEVKVA 167          
BLAST of CX300003 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.349e-16
Identity = 41/63 (65.08%), Postives = 49/63 (77.78%), Query Frame = 3
Query:    3 KEGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 191
            KEG KY++MERR+GK MRKFVLPENAN+EAISA+ QDGVLTVTV+           TI+VK+A
Sbjct:   90 KEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDGVLTVTVNKLPPPEPKKPKTIQVKVA 152          
BLAST of CX300003 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.232e-16
Identity = 41/63 (65.08%), Postives = 49/63 (77.78%), Query Frame = 3
Query:    3 KEGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 191
            +E  KY+RMERR+GKFMRKFVLP+NA+V+ ISAVCQDGVLTVTV+           TIEVK+A
Sbjct:  104 EESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVTVEKLPPPEPKKPKTIEVKVA 166          
BLAST of CX300003 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.166e-15
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 3
Query:    3 KEGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 191
            +E AKY+RMERR+GKFMRKFVLP+NA+++ ISAVC+DGVLTVTV+           TIEVK+A
Sbjct:   99 REDAKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLTVTVEKLPPPEPKKPKTIEVKVA 161          
BLAST of CX300003 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.166e-15
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 3
Query:    3 KEGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 191
            KEG KYVRMERR+GKFM+KF LPE+AN + ISA+CQDGVLTVTV+           TI+V++A
Sbjct:   98 KEGVKYVRMERRMGKFMKKFALPEDANTDKISAICQDGVLTVTVEKLPPPEPKKPKTIQVQVA 160          
BLAST of CX300003 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.988e-15
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 3
Query:    3 KEGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 191
            +E AKY+RMERR+GKFMRKFVLP+NA+V+ ++AVC+DGVLTVTV+           TIE+K+A
Sbjct:   92 REDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVTVEKLPPPEPKKPKTIEIKVA 154          
BLAST of CX300003 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.429e-15
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 3
Query:    3 KEGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 191
            ++ AKY+RMERR+GKFMRKFVLP+NA+V+ ++AVC+DGVLTVTV+           TIEVK+A
Sbjct:  102 EDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVTVEKLPPPEPKKPKTIEVKVA 164          
The following BLAST results are available for this feature:
BLAST of CX300003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
HSP21_SOLPE7.301e-1871.4317.3 kDa class II heat shock protein OS=Solanum pe... [more]
HSP21_IPONI1.627e-1774.1917.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP21_SOYBN2.774e-1769.8417.9 kDa class II heat shock protein OS=Glycine ma... [more]
HSP22_IPONI1.377e-1668.2518.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP21_PEA2.349e-1665.0817.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP18_ORYSJ5.232e-1665.0818.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP21_MAIZE1.166e-1563.4917.5 kDa class II heat shock protein OS=Zea mays P... [more]
HSP21_HELAN1.166e-1561.9017.9 kDa class II heat shock protein OS=Helianthus... [more]
HSP23_MAIZE1.988e-1560.3217.0 kDa class II heat shock protein OS=Zea mays G... [more]
HSP22_MAIZE4.429e-1560.3217.8 kDa class II heat shock protein OS=Zea mays P... [more]

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Properties
Property NameValue
Genbank descriptionC07004H10SK SaltLeaf1 Citrus clementina cDNA clone C07004H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300003 ID=CX300003; Name=CX300003; organism=Citrus clementina; type=EST; length=489bp
AGAAAGAGGGGGCCAAGTATGTGAGAATGGAGAGGAGGGTCGGCAAGTTT
ATGAGGAAATTTGTGCTGCCTGAGAATGCTAACGTTGAAGCCATTTCGGC
TGTGTGTCAGGACGGAGTGTTGACTGTGACCGTCGATAAGCTGCCACCGC
CGGAGCCCAAGAAGCCCAAGACCATTGAGGTTAAGATTGCTTGAACTTTA
AAGAGAGAGAATATGCTGGATTGTGGGTGCTGATGTCTTTTCTATTTGCC
GGTTGTTGTTATGAATAATTTTGCTTGTGGGTGTGACGGTACTATGCCTC
TGTAACCTCCTCTTCCTTTTTCTTTTTTTGTTTTTCTTCCCTTTTTTTCG
AAAATTCTCTCTGTTCACTGGTTTGCGGTTCGGTCTTTAGCATTCCGGAG
GGGAAGCTGACGGCTGTCTACTGGTAGACATCTAGTTGTTATAATTAATG
AAAAATCCAGCTTTTATCTAAAAAAAAAAAAAAAAAAAA
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