CX300066

Overview
NameCX300066
Unique NameCX300066
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig56 contig Ccv1_Contig56:16..404. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300066 vs. ExPASy Swiss-Prot
Match: PST2_ARATH (Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBT PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.390e-11
Identity = 40/95 (42.11%), Postives = 54/95 (56.84%), Query Frame = 3 
Query:  105 SMAKNPAXTRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGRRELVFXXXXXXXXXXXXXXXXESEEPKRGTPDAKKKYAPVCVTMPTARIC 389
            ++AK P+ T  +R  L VV  + S    ++ +    K++SS+  RR+L+F                E EEPKRGT  AKKKYA VCVTMPTA+IC
Sbjct:   13 AVAKVPSATGGRR--LSVVRASTSDNTPSLEV----KEQSSTTMRRDLMFTAAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKIC 101
The following BLAST results are available for this feature:
BLAST of CX300066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PST2_ARATH4.390e-1142.11Photosystem II 5 kDa protein, chloroplastic OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionC07005F11SK SaltLeaf1 Citrus clementina cDNA clone C07005F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300066 ID=CX300066; Name=CX300066; organism=Citrus clementina; type=EST; length=389bp
TAACTCAATTCACCCATTTTGTGTCAACAGAGAAATCACTTGCAACAAAG
TCAGCAGCAAACATGGCTTCGATGACCATGGCAGCAGCCTCATTACTGCC
CACAAGCATGGCCAAAAACCCAGCANCAACAAGAGCGAAGAGAGGAGGCC
TCATCGTTGTGGCCAAGGCTGCATCATCAAAAGCTGAAAATGTGAGCATG
GAATTCAAGAACAAGGATGAGAGCAGCAGCAACGGAAGAAGGGAGCTTGT
GTTTGCAGCANCAGCTGCAGCAGCTTGCTCCATTGCAAAAGTTGCAATGG
CTGAATCTGAGGAGCCCAAACGAGGGACCCCAGATGCTAAAAAGAAGTAT
GCTCCTGTTTGTGTCACAATGCCTACTGCTAGAATCTGT
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