CX300088

Overview
NameCX300088
Unique NameCX300088
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length363
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig827 contig Ccv1_Contig827:1..363. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300088 vs. ExPASy Swiss-Prot
Match: GCSP_SOLTU (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Solanum tuberosum GN=GDCSP PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.235e-18
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 1
Query:    1 KPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 126
            KPYSREYAAYPA WLR AKFWP TGRVDNVYGDRNLICTLLP
Sbjct:  982 KPYSREYAAYPAPWLRSAKFWPTTGRVDNVYGDRNLICTLLP 1023          
BLAST of CX300088 vs. ExPASy Swiss-Prot
Match: GCSP_PEA (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Pisum sativum GN=GDCSP PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.396e-17
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = 1
Query:    1 KPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 126
            KPYSREYAA+PA+WLR AKFWP TGRVDNVYGDRNL+CTLLP
Sbjct: 1003 KPYSREYAAFPAAWLRGAKFWPTTGRVDNVYGDRNLVCTLLP 1044          
BLAST of CX300088 vs. ExPASy Swiss-Prot
Match: GCSP2_ARATH (Glycine dehydrogenase [decarboxylating] 2, mitochondrial OS=Arabidopsis thaliana GN=At4g33010 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.460e-16
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 1
Query:    1 KPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 126
            KPYSREYAA+PA WLR +KFWP TGRVDNVYGDR L+CTLLP
Sbjct:  985 KPYSREYAAFPAPWLRSSKFWPTTGRVDNVYGDRKLVCTLLP 1026          
BLAST of CX300088 vs. ExPASy Swiss-Prot
Match: GCSP1_ARATH (Glycine dehydrogenase [decarboxylating] 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSP PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.460e-16
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 1
Query:    1 KPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 126
            KPYSREYAA+PA WLR +KFWP TGRVDNVYGDRNL+CTL P
Sbjct:  991 KPYSREYAAFPAPWLRSSKFWPTTGRVDNVYGDRNLVCTLQP 1032          
BLAST of CX300088 vs. ExPASy Swiss-Prot
Match: GCSP_FLATR (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria trinervia GN=GDCSPA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.519e-16
Identity = 37/42 (88.10%), Postives = 37/42 (88.10%), Query Frame = 1
Query:    1 KPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 126
            KPYSREYAAYPA WLR AKFWP T RVDNVYGDRNLICTL P
Sbjct:  981 KPYSREYAAYPAPWLRAAKFWPTTCRVDNVYGDRNLICTLQP 1022          
BLAST of CX300088 vs. ExPASy Swiss-Prot
Match: GCSP_FLAAN (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria anomala GN=GDCSP PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.519e-16
Identity = 37/42 (88.10%), Postives = 37/42 (88.10%), Query Frame = 1
Query:    1 KPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 126
            KPYSREYAAYPA WLR AKFWP T RVDNVYGDRNLICTL P
Sbjct:  981 KPYSREYAAYPAPWLRAAKFWPTTCRVDNVYGDRNLICTLQP 1022          
BLAST of CX300088 vs. ExPASy Swiss-Prot
Match: GCSPB_FLAPR (Glycine dehydrogenase [decarboxylating] B, mitochondrial OS=Flaveria pringlei GN=GDCSPB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.519e-16
Identity = 37/42 (88.10%), Postives = 37/42 (88.10%), Query Frame = 1
Query:    1 KPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 126
            KPYSREYAAYPA WLR AKFWP T RVDNVYGDRNLICTL P
Sbjct:  981 KPYSREYAAYPAPWLRAAKFWPTTCRVDNVYGDRNLICTLQP 1022          
BLAST of CX300088 vs. ExPASy Swiss-Prot
Match: GCSPA_FLAPR (Glycine dehydrogenase [decarboxylating] A, mitochondrial OS=Flaveria pringlei GN=GDCSPA PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.519e-16
Identity = 37/42 (88.10%), Postives = 37/42 (88.10%), Query Frame = 1
Query:    1 KPYSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 126
            KPYSREYAAYPA WLR AKFWP T RVDNVYGDRNLICTL P
Sbjct:  984 KPYSREYAAYPAPWLRAAKFWPTTCRVDNVYGDRNLICTLQP 1025          
BLAST of CX300088 vs. ExPASy Swiss-Prot
Match: GCSP_LEPIN (Glycine dehydrogenase [decarboxylating] OS=Leptospira interrogans GN=gcvP PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.031e-12
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 1
Query:    7 YSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 126
            Y RE AAYPASWL+  KFWP  GRVDNVYGDRNL+C+ LP
Sbjct:  920 YPRERAAYPASWLKDHKFWPYVGRVDNVYGDRNLVCSCLP 959          
BLAST of CX300088 vs. ExPASy Swiss-Prot
Match: GCSP_LEPIC (Glycine dehydrogenase [decarboxylating] OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=gcvP PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.031e-12
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 1
Query:    7 YSREYAAYPASWLRFAKFWPATGRVDNVYGDRNLICTLLP 126
            Y RE AAYPASWL+  KFWP  GRVDNVYGDRNL+C+ LP
Sbjct:  920 YPRERAAYPASWLKDHKFWPYVGRVDNVYGDRNLVCSCLP 959          
The following BLAST results are available for this feature:
BLAST of CX300088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GCSP_SOLTU8.235e-1892.86Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_PEA2.396e-1788.10Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP2_ARATH3.460e-1683.33Glycine dehydrogenase [decarboxylating] 2, mitocho... [more]
GCSP1_ARATH3.460e-1683.33Glycine dehydrogenase [decarboxylating] 1, mitocho... [more]
GCSP_FLATR4.519e-1688.10Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_FLAAN4.519e-1688.10Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSPB_FLAPR4.519e-1688.10Glycine dehydrogenase [decarboxylating] B, mitocho... [more]
GCSPA_FLAPR4.519e-1688.10Glycine dehydrogenase [decarboxylating] A, mitocho... [more]
GCSP_LEPIN3.031e-1275.00Glycine dehydrogenase [decarboxylating] OS=Leptosp... [more]
GCSP_LEPIC3.031e-1275.00Glycine dehydrogenase [decarboxylating] OS=Leptosp... [more]

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Properties
Property NameValue
Genbank descriptionC07005H09SK SaltLeaf1 Citrus clementina cDNA clone C07005H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300088 ID=CX300088; Name=CX300088; organism=Citrus clementina; type=EST; length=363bp
AAACCATACTCTCGAGAATATGCAGCCTATCCTGCTTCCTGGCTCCGGTT
TGCTAAGTTCTGGCCTGCTACAGGACGCGTTGACAATGTGTATGGTGACC
GCAACCTCATCTGCACCCTTCTTCCAGCTGCACAAGTTGCTGAGGAGCAG
GCTGCAGCCACTGCTTAGAGTTGCCATCAACATGCCCCCTGGTGCAAGGT
TTCTTCAGGAGCATGGAAAAATTTGGAATCATCAGCACTTCCTGATTTGA
TTGTATATATNAATACAGAGCCTCATGGCCCAATGCTTCCCTTTGATATA
CTGATTAATTATATCAGCTTCTTTAATAACAATAGTTGCTGATTGCAAAA
AAAAAAAAAAAAA
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