CX300116

Overview
NameCX300116
Unique NameCX300116
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length527
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14257 contig Ccv1_Contig14257:603..1129. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: RN126_MOUSE (RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.791e-18
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = 3
Query:   81 NNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHEL 362
            N LD +I ++L     T   PPA KE +  LP + +TEE    +G   EC +CKE+  +G+ +++LPC H FH  C+ PWL++H+SCP+CR  L
Sbjct:  186 NGLDTIITQLLNQFENTGP-PPADKEKIQALPTVPVTEE---HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 275          
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: RN126_HUMAN (RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.989e-18
Identity = 39/94 (41.49%), Postives = 60/94 (63.83%), Query Frame = 3
Query:   81 NNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHEL 362
            N LD +I ++L     T   PPA KE +  LP + +TEE    +G   EC +CK++  +G+++++LPC H FH  C+ PWL++H+SCP+CR  L
Sbjct:  184 NGLDAIITQLLNQFENTGP-PPADKEKIQALPTVPVTEE---HVGSGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 273          
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: RN126_XENTR (RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.805e-18
Identity = 41/100 (41.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:   81 NNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHA 380
            N LD +I ++L     T   PPA  E +  LP I +TEE    +G   EC +CKE+  VG+ +++LPC H FH  C+ PWL++H++CP+CR  L   + A
Sbjct:  182 NGLDTIITQLLNQFENTGP-PPADTEKIQALPTIQITEE---HVGSGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTA 277          
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: R126A_XENLA (RING finger protein 126-A OS=Xenopus laevis GN=rnf126-A PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.161e-17
Identity = 41/100 (41.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:   81 NNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHA 380
            N LD +I ++L     T   PPA  E +  LP I +TEE    +G   EC +CKE+  VG+ +++LPC H FH  C+ PWL++H++CP+CR  L   + A
Sbjct:  183 NGLDTIITQLLNQFENTGP-PPADNEKIQALPTIQITEE---HVGSGLECPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTA 278          
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: RN115_HUMAN (RING finger protein 115 OS=Homo sapiens GN=RNF115 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.516e-17
Identity = 39/102 (38.24%), Postives = 65/102 (63.73%), Query Frame = 3
Query:   87 LDDVIPEIL-ETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYES 389
            LD ++ ++L + ++  P  PPA KE +  LP +T+T+E +D      EC +CKE+  V +++++LPC H FH  C+ PWL+ H++CP+CR  L  +D   +S
Sbjct:  185 LDAIVTQLLGQLENTGP--PPADKEKITSLPTVTVTQEQVDM---GLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQS 281          
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: R126B_XENLA (RING finger protein 126-B OS=Xenopus laevis GN=rnf126-B PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.516e-17
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:   81 NNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHA 380
            N LD +I ++L     T   PPA  + +  LP I +TEE    +G   EC +CKE+  VG+ +++LPC H FH  C+ PWL++H++CP+CR  L   + A
Sbjct:  183 NGLDTIITQLLNQFENTGP-PPADTDKIQALPTIQITEE---HVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTA 278          
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: RN181_XENLA (E3 ubiquitin-protein ligase rnf181 OS=Xenopus laevis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.980e-17
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 3
Query:  105 EILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESW 392
            +  E D   P  PPASK+VV  LP +T+T E  D      +C +C      G+ +++LPC+H FH  C+ PWL + NSCP+CRHEL TD   YE +
Sbjct:   43 DFTEWDQRLP--PPASKKVVESLPKVTVTPEQADAA---LKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHELPTDSPDYEEF 133          
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: RN126_BOVIN (RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.980e-17
Identity = 39/94 (41.49%), Postives = 59/94 (62.77%), Query Frame = 3
Query:   81 NNLDDVIPEILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHEL 362
            N LD +I ++L     T   PPA KE +  LP + +TEE    +G   EC +CK++  +G+ +++LPC H FH  C+ PWL++H+SCP+CR  L
Sbjct:  187 NGLDAIITQLLNQFENTGP-PPADKEKIQALPTVPVTEE---HVGSGLECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 276          
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: RN181_XENTR (E3 ubiquitin-protein ligase rnf181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.586e-17
Identity = 41/96 (42.71%), Postives = 57/96 (59.38%), Query Frame = 3
Query:  105 EILETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESW 392
            +  E D   P  PPA+K+VV  LP +T+T E  D      +C +C      G+ +++LPC+H FH  C+ PWL + NSCP+CRHEL TD   YE +
Sbjct:   43 DFTEWDQRLP--PPAAKKVVESLPKVTVTPEQADAA---LKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHELPTDSPEYEEY 133          
BLAST of CX300116 vs. ExPASy Swiss-Prot
Match: RN115_MOUSE (RING finger protein 115 OS=Mus musculus GN=Rnf115 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.586e-17
Identity = 38/97 (39.18%), Postives = 63/97 (64.95%), Query Frame = 3
Query:   87 LDDVIPEIL-ETDSATPRVPPASKEVVAKLPVITLTEEILDKLGHDAECAICKENLLVGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDD 374
            LD ++ ++L + ++  P  PPA KE +  LP +T+T+E   ++    EC +CKE+  V +K+++LPC H FH  C+ PWL+ H++CP+CR  L  +D
Sbjct:  186 LDAIVTQLLGQLENTGP--PPADKEKITSLPTVTVTQE---QVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGED 277          
The following BLAST results are available for this feature:
BLAST of CX300116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RN126_MOUSE1.791e-1842.55RING finger protein 126 OS=Mus musculus GN=Rnf126 ... [more]
RN126_HUMAN3.989e-1841.49RING finger protein 126 OS=Homo sapiens GN=RNF126 ... [more]
RN126_XENTR6.805e-1841.00RING finger protein 126 OS=Xenopus tropicalis GN=r... [more]
R126A_XENLA1.161e-1741.00RING finger protein 126-A OS=Xenopus laevis GN=rnf... [more]
RN115_HUMAN1.516e-1738.24RING finger protein 115 OS=Homo sapiens GN=RNF115 ... [more]
R126B_XENLA1.516e-1740.00RING finger protein 126-B OS=Xenopus laevis GN=rnf... [more]
RN181_XENLA1.980e-1743.75E3 ubiquitin-protein ligase rnf181 OS=Xenopus laev... [more]
RN126_BOVIN1.980e-1741.49RING finger protein 126 OS=Bos taurus GN=RNF126 PE... [more]
RN181_XENTR2.586e-1742.71E3 ubiquitin-protein ligase rnf181 OS=Xenopus trop... [more]
RN115_MOUSE2.586e-1739.18RING finger protein 115 OS=Mus musculus GN=Rnf115 ... [more]

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Properties
Property NameValue
Genbank descriptionC07006C12SK SaltLeaf1 Citrus clementina cDNA clone C07006C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300116 ID=CX300116; Name=CX300116; organism=Citrus clementina; type=EST; length=527bp
GCTCTGCTGAGTCTTCTCGGGGTTTGGCAGAGAGAATTAACAATTCTGAA
ACTGTTGCCAATCTTTTCCAAGAGTTGGTTAATAACCTTGATGATGTTAT
ACCCGAGATACTGGAGACTGATAGTGCAACCCCCAGAGTCCCACCTGCCA
GTAAAGAAGTTGTTGCAAAGCTACCGGTCATTACACTTACAGAAGAAATT
CTGGACAAGTTGGGACATGATGCAGAGTGTGCAATTTGCAAGGAGAACTT
GCTTGTAGGTGACAAAATGCAAGAGTTGCCATGCAAGCACACGTTCCATC
CTCCCTGTCTAAAACCATGGCTGGACGAACATAATTCTTGTCCAATTTGC
CGGCACGAACTGCAAACTGATGACCATGCATATGAGAGCTGGAAGGAGCG
GGAGAAGGAGGCCCAAGAAGAGAGGAAAGGTGCTGCAAATGCTGTACGTG
GTGGTGAATACATGTATGTTTAGTGACGGTTATTTGTTGGAATTCATTGG
CTAGCTGATGACCATGATTATGAGAGC
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