CX300129

Overview
NameCX300129
Unique NameCX300129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300129 vs. ExPASy Swiss-Prot
Match: U737_TOBAC (UPF0737 protein mc410 OS=Nicotiana tabacum GN=MC410 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.213e-53
Identity = 103/165 (62.42%), Postives = 124/165 (75.15%), Query Frame = 2
Query:   17 QIHPSYAGRGPQNSDKHSDGIKIPQATMQSIGRNSSEAAQFDGRTIEWAKGEGKQHAAEEGSSARAED-VKVSGMNHRANDISDRSTPEGLSLDLSAIKPGIAAEIKFGGCGSCPNLPWVSTTGSGPNGRTISGVTYRYSSNQIRIVCACHGSHMSPEEFVRHAS 508
            Q+HPS+ GRGP  SDK  DG  I QA   SI   SS++ Q+DGR +E  KG G+QH AEE S++R E+ VK S ++ RA D  D+   E +  + S I+PG+AA++KFGG GS PNLPWVSTTG GPNGRTISGVTYRYSS QIRIVCACHGSHMSP++FVRHAS
Sbjct:  321 QLHPSH-GRGPLGSDKQKDGPNISQAAASSIPHKSSDSVQYDGRAMEHVKGNGRQHKAEETSNSRGEENVKGSNISFRAKDPPDQPRAEAVPSEFSTIRPGLAADLKFGGSGSYPNLPWVSTTGPGPNGRTISGVTYRYSSTQIRIVCACHGSHMSPDDFVRHAS 484          
BLAST of CX300129 vs. ExPASy Swiss-Prot
Match: U7375_ARATH (UPF0737 protein At4g28910 OS=Arabidopsis thaliana GN=AFPH2 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.189e-38
Identity = 79/117 (67.52%), Postives = 91/117 (77.78%), Query Frame = 2
Query:  161 AKGEGKQHAAEEGSSARAEDVKVSGMNHRANDISDRSTPEGLSLDLSAIKPGIAAEIKFGGCGSCPNLPWVSTTGSGPNGRTISGVTYRYSSNQIRIVCACHGSHMSPEEFVRHASD 511
            AKGEGKQ  AEEGSS  A + + +G N   N           S D SAIKPG+AA++KFGG G+ PNLPWVSTTGSGP+GRTISGVTYRY++NQI+IVCACHGSHMSPEEFVRHAS+
Sbjct:  300 AKGEGKQPVAEEGSSEDASE-RPTGDNSNLNT--------AFSFDFSAIKPGMAADVKFGGSGARPNLPWVSTTGSGPHGRTISGVTYRYNANQIKIVCACHGSHMSPEEFVRHASE 407          
BLAST of CX300129 vs. ExPASy Swiss-Prot
Match: U7378_MAIZE (UPF0737 protein 8 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 7.162e-30
Identity = 61/110 (55.45%), Postives = 82/110 (74.55%), Query Frame = 2
Query:  188 AEEGSSARAEDVKV---SGMNHRANDISDRSTPEGLSLDLSAIKPGIAAEIKFGGCGSCPNLPWVSTTGSGPNGRTISGVTYRYSSNQIRIVCACHGSHMSPEEFVRHAS 508
            A++  + + +D K    +G +  A+   ++    GLSL  SAI+PGIA  +KFGG GS P+LPWVST G+GPNGRTISGVTY++  N+++IVCACHG+HMSPEEF+RHAS
Sbjct:  343 ADQTGTKQVDDGKKPQEAGASSSAHAEDEKKADRGLSLMGSAIRPGIAPNVKFGGSGSYPDLPWVSTIGAGPNGRTISGVTYKFGRNEVKIVCACHGTHMSPEEFMRHAS 452          
BLAST of CX300129 vs. ExPASy Swiss-Prot
Match: U7377_MAIZE (UPF0737 protein 7 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 7.162e-30
Identity = 61/110 (55.45%), Postives = 82/110 (74.55%), Query Frame = 2
Query:  188 AEEGSSARAEDVKV---SGMNHRANDISDRSTPEGLSLDLSAIKPGIAAEIKFGGCGSCPNLPWVSTTGSGPNGRTISGVTYRYSSNQIRIVCACHGSHMSPEEFVRHAS 508
            A++  + + +D K    +G +  A+   ++    GLSL  SAI+PGIA  +KFGG GS P+LPWVST G+GPNGRTISGVTY++  N+++IVCACHG+HMSPEEF+RHAS
Sbjct:  343 ADQTGTKQVDDGKKPREAGASSSAHAEDEKKADRGLSLMGSAIRPGIAPNVKFGGSGSYPDLPWVSTIGAGPNGRTISGVTYKFGRNEVKIVCACHGTHMSPEEFMRHAS 452          
BLAST of CX300129 vs. ExPASy Swiss-Prot
Match: U7374_ORYSJ (UPF0737 protein Os05g0558800 OS=Oryza sativa subsp. japonica GN=Os05g0558800 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.555e-29
Identity = 61/109 (55.96%), Postives = 80/109 (73.39%), Query Frame = 2
Query:  191 EEGSSARAEDVKVS---GMNHRANDISDRSTPEGLSLDLSAIKPGIAAEIKFGGCGSCPNLPWVSTTGSGPNGRTISGVTYRYSSNQIRIVCACHGSHMSPEEFVRHAS 508
            E    ++A+D K +   G +  A    D+ +   L L  SAI+PGIA  +KFGG GS P+LPWVSTTG+GPNGRTISGVTY++  N+++IVCACHG+HM+PEEF+RHAS
Sbjct:  317 ERAGISQADDGKKTQEAGASSSALVEDDKKSDRALPLMGSAIRPGIAPNVKFGGSGSYPDLPWVSTTGTGPNGRTISGVTYKFGRNEVKIVCACHGTHMTPEEFMRHAS 425          
BLAST of CX300129 vs. ExPASy Swiss-Prot
Match: U7373_ARATH (UPF0737 protein AFP3 OS=Arabidopsis thaliana GN=AFP3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.157e-12
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:  359 NLPWVSTTGSGPNGRTISGVTYRY-SSNQIRIVCACHGSHMSPEEFVRHA 505
            ++P+VSTTG GPNG+ I+G  YRY    ++RIVC CHGS +SP EFV+HA
Sbjct:  162 DMPFVSTTGDGPNGKKINGFLYRYRKGEEVRIVCVCHGSFLSPAEFVKHA 211          
The following BLAST results are available for this feature:
BLAST of CX300129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
U737_TOBAC1.213e-5362.42UPF0737 protein mc410 OS=Nicotiana tabacum GN=MC41... [more]
U7375_ARATH4.189e-3867.52UPF0737 protein At4g28910 OS=Arabidopsis thaliana ... [more]
U7378_MAIZE7.162e-3055.45UPF0737 protein 8 OS=Zea mays PE=2 SV=1[more]
U7377_MAIZE7.162e-3055.45UPF0737 protein 7 OS=Zea mays PE=2 SV=1[more]
U7374_ORYSJ3.555e-2955.96UPF0737 protein Os05g0558800 OS=Oryza sativa subsp... [more]
U7373_ARATH5.157e-1260.00UPF0737 protein AFP3 OS=Arabidopsis thaliana GN=AF... [more]
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Properties
Property NameValue
Genbank descriptionC07006E06SK SaltLeaf1 Citrus clementina cDNA clone C07006E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300129 ID=CX300129; Name=CX300129; organism=Citrus clementina; type=EST; length=512bp
GGTTCCTCAGTCTCAGCAGATCCACCCTTCTTATGCTGGTAGAGGTCCAC
AAAACTCAGATAAGCATAGCGATGGAATAAAGATTCCTCAAGCTACCATG
CAATCAATTGGACGTAATTCATCCGAGGCTGCACAATTTGATGGGAGAAC
GATAGAATGGGCCAAAGGTGAAGGGAAACAGCATGCTGCAGAAGAAGGCT
CCTCTGCTCGAGCAGAAGATGTAAAAGTAAGTGGCATGAACCATAGGGCA
AACGATATATCCGACAGATCAACACCAGAAGGTCTTTCTCTTGATTTATC
AGCTATAAAGCCTGGTATTGCTGCTGAAATAAAATTTGGGGGATGTGGTT
CTTGCCCAAATTTACCATGGGTGTCAACCACAGGTTCTGGCCCAAATGGT
AGAACAATTTCCGGTGTTACTTATAGGTACAGTTCAAACCAGATCAGGAT
TGTTTGTGCTTGCCATGGAAGCCATATGTCCCCAGAGGAGTTTGTTCGAC
ATGCCAGCGATG
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