CX300132

Overview
NameCX300132
Unique NameCX300132
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length401
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300132 vs. ExPASy Swiss-Prot
Match: SUFE_ARATH (SufE-like protein, chloroplastic OS=Arabidopsis thaliana GN=EMB1374 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 5.813e-24
Identity = 54/91 (59.34%), Postives = 70/91 (76.92%), Query Frame = 2
Query:    8 TRAMRMETKLRSALEATVLEIDDVSHKHAVHAAVKDS--NSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQE 274
            +R MR+  KL   L+   LE++DVS++HA HAAV+ S  + GETHF+L+IVS  F+GK+LV RHR++Y +L DEL SGLHALSIVAKTP E
Sbjct:  280 SRGMRIREKLEKELDPVELEVEDVSYQHAGHAAVRGSAGDDGETHFNLRIVSDAFQGKSLVKRHRLIYDLLQDELKSGLHALSIVAKTPAE 370          
BLAST of CX300132 vs. ExPASy Swiss-Prot
Match: YA044_YEAST (Uncharacterized bolA-like protein YAL044W-A OS=Saccharomyces cerevisiae GN=YAL044W-A PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.587e-13
Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 2
Query:   80 SHKHAVHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDEL--NSGLHALSIVAKTPQE 274
            SHKH  HA V+ + S ETHF +++VS KFEG  L  RHRMVY +L DE+   +G+HAL +  KTPQE
Sbjct:   38 SHKHKGHAGVQGNVSAETHFRIEMVSKKFEGLKLPQRHRMVYSLLQDEMAQANGIHALQLSLKTPQE 104          
BLAST of CX300132 vs. ExPASy Swiss-Prot
Match: UVI31_SCHPO (UV-induced protein uvi31 OS=Schizosaccharomyces pombe GN=uvi31 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.535e-13
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 2
Query:   11 RAMRMETKLRSALEATVLEIDDVSHKHAVHAAVKD-SNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHALSIV-AKTPQEAA 280
            R  R+   L  AL+   + + + S+KH+ H A+K   ++ ETHF L+IVSP+F G + V RHR+VY +L DE + GLHAL I  +KTP E +
Sbjct:   11 RQDRIYKTLSEALKTDKITLYNDSYKHSHHIAMKGVPDTNETHFRLEIVSPEFSGMSRVARHRLVYGLLKDEFDGGLHALQITSSKTPDEVS 102          
BLAST of CX300132 vs. ExPASy Swiss-Prot
Match: BOLA_SHIFL (Protein bolA OS=Shigella flexneri GN=bolA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.485e-11
Identity = 34/85 (40.00%), Postives = 55/85 (64.71%), Query Frame = 2
Query:   20 RMETKLRSALEATVLEIDDVSHKHAVHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQE 274
            R+E KLR+A +   LE+ D S++H V A        E+HF + +VS +F G+  +NRHRM+Y  L++EL++ +HAL++   T +E
Sbjct:    6 RIEEKLRAAFQPVFLEVVDESYRHNVPAG------SESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHALALHTYTIKE 84          
BLAST of CX300132 vs. ExPASy Swiss-Prot
Match: BOLA_ECOLI (Protein bolA OS=Escherichia coli (strain K12) GN=bolA PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.485e-11
Identity = 34/85 (40.00%), Postives = 55/85 (64.71%), Query Frame = 2
Query:   20 RMETKLRSALEATVLEIDDVSHKHAVHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQE 274
            R+E KLR+A +   LE+ D S++H V A        E+HF + +VS +F G+  +NRHRM+Y  L++EL++ +HAL++   T +E
Sbjct:    6 RIEEKLRAAFQPVFLEVVDESYRHNVPAG------SESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHALALHTYTIKE 84          
BLAST of CX300132 vs. ExPASy Swiss-Prot
Match: BOLA_ECOL6 (Protein bolA OS=Escherichia coli O6 GN=bolA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.485e-11
Identity = 34/85 (40.00%), Postives = 55/85 (64.71%), Query Frame = 2
Query:   20 RMETKLRSALEATVLEIDDVSHKHAVHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQE 274
            R+E KLR+A +   LE+ D S++H V A        E+HF + +VS +F G+  +NRHRM+Y  L++EL++ +HAL++   T +E
Sbjct:    6 RIEEKLRAAFQPVFLEVVDESYRHNVPAG------SESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHALALHTYTIKE 84          
BLAST of CX300132 vs. ExPASy Swiss-Prot
Match: BOLA1_MOUSE (BolA-like protein 1 OS=Mus musculus GN=Bola1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.533e-11
Identity = 37/84 (44.05%), Postives = 52/84 (61.90%), Query Frame = 2
Query:   23 METKLRSALEATVLEIDDVSHKHAVHAAVKDSNSGETHFDLKIVSPKFEGKNLVNRHRMVYQVLSDELNSGLHALSIVAKTPQE 274
            +  KL  AL   VLE+ + S  HAV A        ETHF + +VS +FEG + + RHR+V++ LS+EL   +HAL+I AKTP +
Sbjct:   36 IRAKLEQALSPEVLELRNESGGHAVPAG------SETHFRVAVVSSRFEGMSPLQRHRLVHEALSEELAGPVHALAIQAKTPAQ 113          
The following BLAST results are available for this feature:
BLAST of CX300132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SUFE_ARATH5.813e-2459.34SufE-like protein, chloroplastic OS=Arabidopsis th... [more]
YA044_YEAST1.587e-1355.22Uncharacterized bolA-like protein YAL044W-A OS=Sac... [more]
UVI31_SCHPO3.535e-1344.57UV-induced protein uvi31 OS=Schizosaccharomyces po... [more]
BOLA_SHIFL1.485e-1140.00Protein bolA OS=Shigella flexneri GN=bolA PE=3 SV=... [more]
BOLA_ECOLI1.485e-1140.00Protein bolA OS=Escherichia coli (strain K12) GN=b... [more]
BOLA_ECOL61.485e-1140.00Protein bolA OS=Escherichia coli O6 GN=bolA PE=3 S... [more]
BOLA1_MOUSE2.533e-1144.05BolA-like protein 1 OS=Mus musculus GN=Bola1 PE=1 ... [more]
back to top
Properties
Property NameValue
Genbank descriptionC07006E12SK SaltLeaf1 Citrus clementina cDNA clone C07006E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300132 ID=CX300132; Name=CX300132; organism=Citrus clementina; type=EST; length=401bp
AGTGATAACGAGGGCAATGAGAATGGAAACGAAGTTGAGATCGGCGTTAG
AAGCGACCGTACTAGAAATCGACGACGTGTCGCACAAGCACGCGGTCCAC
GCCGCCGTGAAGGATTCGAATTCCGGGGAAACTCATTTCGACTTGAAGAT
CGTGTCGCCGAAATTCGAAGGGAAGAACCTCGTCAACCGCCACAGAATGG
TCTATCAGGTTTTATCTGATGAACTCAACTCCGGATTGCACGCCCTCTCT
ATCGTCGCAAAAACCCCTCAAGAAGCTGCCCTCAAGTAGTTTTTTTTTAT
TTATTAATTGTATTTTTAAAATTTTAGCTATTTATAAGTAGTGATTATTT
AGCTGAACTTGAAAATTGGGCTTTTATTATCAAAAAAAAAAAAAAAAAAA
A
back to top