CX300140

Overview
NameCX300140
Unique NameCX300140
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length458
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4991 contig Ccv1_Contig4991:473..930. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 1.294e-76
Identity = 135/152 (88.82%), Postives = 144/152 (94.74%), Query Frame = 2
Query:    2 RFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLHTTILDT 457
            RFRECELIHGRWAMLATLGA+TVEWLTG+TWQDAGKV+LV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGKFFDPLGLA+DP KKA LQLAEIKHARLAM  FLGFA QA  TGKGP+NNWATHLSDPLHTTI+DT
Sbjct:  132 RFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDT 283          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 1.690e-76
Identity = 136/152 (89.47%), Postives = 144/152 (94.74%), Query Frame = 2
Query:    2 RFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLHTTILDT 457
            RFRECELIHGRWAMLATLGAL+VEWLTG+TWQDAGKV+LV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGKFFDPLGLAADP K A LQLAEIKHARLAM AFLGFA QA  TGKGP+NNWATHLSDPLHTTI+DT
Sbjct:  135 RFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDT 286          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.101e-59
Identity = 114/139 (82.01%), Postives = 124/139 (89.21%), Query Frame = 2
Query:    2 RFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWAT 418
            RFRECELIHGRWAML TLGA+ VE LTGI WQDAGKV+LVEGSSYLGQPLPFS+TTLIWIEVLV+GYIEFQRNSELDPEKR+YPGG +FDPLGLAADP K  TL+LAEIKH+RLAM AFL FA QA  TGKGP++  AT
Sbjct:  136 RFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 1.494e-40
Identity = 86/139 (61.87%), Postives = 107/139 (76.98%), Query Frame = 2
Query:    2 RFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADP*KKA-TLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWA 415
            RFRECELIHGRWAMLA LGAL  E  TG++W +AGKV+L +G+SY G  LPFSIT LIWIEV+++G  EF RNSE +PEKR YPGG  FDPL LA++  ++A  L+ AEIKHARLAM +F G+  QA+ TG+G + + A
Sbjct:  132 RFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGG-VFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA 268          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 7.693e-29
Identity = 72/155 (46.45%), Postives = 98/155 (63.23%), Query Frame = 2
Query:    2 RFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEG--SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGF-ASQAVVTGKGPINNWATHLSDPLHTTILD 454
            R++E ELIH RWAMLA  G +  E L    W  A +   + G  ++YLGQP+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG  FDPLG + DP K   L++ EIK+ RLA+ A +GF   Q+   G GP+ N ATHL+DP H  I D
Sbjct:   83 RYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGA-FDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGD 236          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.005e-28
Identity = 75/155 (48.39%), Postives = 96/155 (61.94%), Query Frame = 2
Query:    2 RFRECELIHGRWAMLATLGALTVEWLTGITWQDAGK-VQLVEG-SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGF-ASQAVVTGKGPINNWATHLSDPLHTTILD 454
            RF+E E+ H RWAML   G L  E L    W  A +   L +G ++YLG P+P+ ++ T++ IE L I + E QR  E DPEK+ YPGG F DPLG + DP K   L+L EIK+ RLAM AF+GF   Q+   G GP+ N ATHL+DP H  I D
Sbjct:   82 RFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAF-DPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 235          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.149e-24
Identity = 68/161 (42.24%), Postives = 96/161 (59.63%), Query Frame = 2
Query:    2 RFRECELIHGRWAMLATLGALTVEWLTGI--------TWQDAGKVQLVEGSS--YLGQPLPFSITTLIWIEVLVIGYIEFQR-NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLHTTIL 451
            +++  ELIH RWAML   G +  E L            W   G + L++G++  Y G+ +P ++   +  EV+++G  E+ R  + LD E +L+PGG F DPLGLA DP + A L++ EIK+ RLAM A LGF  QA VTG+GP+ N A HLSDP    +L
Sbjct:  109 KYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPF-DPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLL 267          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.561e-24
Identity = 72/160 (45.00%), Postives = 91/160 (56.88%), Query Frame = 2
Query:    2 RFRECELIHGRWAMLATLGALTVEWL---TGI-----TWQDAGKVQLVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQRNSELD---PEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPL 436
            R R  E+IHGRWAML  LG +  E L    G+      W  AG     EG   YLG P      SI  ++  +VL++G +E  R + LD       LYPGG++FDPLGLA DP   A L++ EIK+ RLAM +  GF  QA+VTGKGP+ N   HL DP+
Sbjct:   94 RNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPV 253          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.660e-23
Identity = 74/161 (45.96%), Postives = 93/161 (57.76%), Query Frame = 2
Query:    2 RFRECELIHGRWAMLATLGALTVEWLT---GI-----TWQDAGKVQLVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQR---NSE--LDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDP 433
            R+RE ELIH RWA+L  LG LT E L+   G+      W  AG     +G  +YLG        SI   + ++V+++G  E  R    SE  LD    LYPGG F DPLGLA DP   A L++ EIK+ RLAM + LGF  QA+VTGKGP+ N   HL+DP
Sbjct:   78 RYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPF-DPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADP 237          
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.831e-23
Identity = 73/162 (45.06%), Postives = 93/162 (57.41%), Query Frame = 2
Query:    2 RFRECELIHGRWAMLATLGALTVEWLT---GI-----TWQDAGKVQLVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDP 433
            ++RE E+IH RWA+L  LG LT E L+   G+      W  AG     EG   YLG P      +I   + ++V+++G IE  R         LDP   LYPG + FDPLGLA DP   A L++ EIK+ RLAM +  GF  QA+VTGKGPI N A HL+DP
Sbjct:   83 KYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDP---LYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADP 240          
The following BLAST results are available for this feature:
BLAST of CX300140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB4B_ARATH1.294e-7688.82Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4A_ARATH1.690e-7689.47Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4C_ARATH1.101e-5982.01Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB29_CHLRE1.494e-4061.87Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB11_SOLLC7.693e-2946.45Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU1.005e-2848.39Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB26_ARATH1.149e-2442.24Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB23_HORVU2.561e-2445.00Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_DUNTE1.660e-2345.96Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO2.831e-2345.06Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionC07006F08SK SaltLeaf1 Citrus clementina cDNA clone C07006F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300140 ID=CX300140; Name=CX300140; organism=Citrus clementina; type=EST; length=458bp
GAGGTTCCGTGAGTGTGAGCTCATTCATGGACGTTGGGCCATGTTGGCTA
CTCTCGGTGCCCTCACTGTTGAGTGGCTCACTGGGATTACTTGGCAAGAC
GCTGGCAAGGTACAGTTAGTTGAAGGATCATCATACCTGGGGCAACCACT
TCCATTCTCAATAACAACGTTGATATGGATTGAGGTTTTGGTAATTGGCT
ACATTGAGTTCCAAAGAAACTCAGAGCTTGACCCGGAGAAGAGACTCTAC
CCGGGAGGAAAGTTTTTTGATCCTCTGGGCTTGGCCGCTGACCCGTAAAA
GAAAGCCACCCTTCAATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGG
ATGCATTCCTTGGCTTCGCTAGCCAAGCTGTTGTCACCGGAAAAGGCCCT
ATCAACAACTGGGCTACCCACTTGAGCGATCCTCTTCACACAACCATTCT
TGACACCT
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