CX300140
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 284.648 bits (727), Expect = 1.294e-76 Identity = 135/152 (88.82%), Postives = 144/152 (94.74%), Query Frame = 2 Query: 2 RFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLHTTILDT 457 RFRECELIHGRWAMLATLGA+TVEWLTG+TWQDAGKV+LV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGKFFDPLGLA+DP KKA LQLAEIKHARLAM FLGFA QA TGKGP+NNWATHLSDPLHTTI+DT Sbjct: 132 RFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDT 283
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 284.263 bits (726), Expect = 1.690e-76 Identity = 136/152 (89.47%), Postives = 144/152 (94.74%), Query Frame = 2 Query: 2 RFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLHTTILDT 457 RFRECELIHGRWAMLATLGAL+VEWLTG+TWQDAGKV+LV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGKFFDPLGLAADP K A LQLAEIKHARLAM AFLGFA QA TGKGP+NNWATHLSDPLHTTI+DT Sbjct: 135 RFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDT 286
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 228.409 bits (581), Expect = 1.101e-59 Identity = 114/139 (82.01%), Postives = 124/139 (89.21%), Query Frame = 2 Query: 2 RFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWAT 418 RFRECELIHGRWAML TLGA+ VE LTGI WQDAGKV+LVEGSSYLGQPLPFS+TTLIWIEVLV+GYIEFQRNSELDPEKR+YPGG +FDPLGLAADP K TL+LAEIKH+RLAM AFL FA QA TGKGP++ AT Sbjct: 136 RFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 164.851 bits (416), Expect = 1.494e-40 Identity = 86/139 (61.87%), Postives = 107/139 (76.98%), Query Frame = 2 Query: 2 RFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADP*KKA-TLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWA 415 RFRECELIHGRWAMLA LGAL E TG++W +AGKV+L +G+SY G LPFSIT LIWIEV+++G EF RNSE +PEKR YPGG FDPL LA++ ++A L+ AEIKHARLAM +F G+ QA+ TG+G + + A Sbjct: 132 RFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGG-VFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA 268
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 7.693e-29 Identity = 72/155 (46.45%), Postives = 98/155 (63.23%), Query Frame = 2 Query: 2 RFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVQLVEG--SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGF-ASQAVVTGKGPINNWATHLSDPLHTTILD 454 R++E ELIH RWAMLA G + E L W A + + G ++YLGQP+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG FDPLG + DP K L++ EIK+ RLA+ A +GF Q+ G GP+ N ATHL+DP H I D Sbjct: 83 RYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGA-FDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGD 236
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 1.005e-28 Identity = 75/155 (48.39%), Postives = 96/155 (61.94%), Query Frame = 2 Query: 2 RFRECELIHGRWAMLATLGALTVEWLTGITWQDAGK-VQLVEG-SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGF-ASQAVVTGKGPINNWATHLSDPLHTTILD 454 RF+E E+ H RWAML G L E L W A + L +G ++YLG P+P+ ++ T++ IE L I + E QR E DPEK+ YPGG F DPLG + DP K L+L EIK+ RLAM AF+GF Q+ G GP+ N ATHL+DP H I D Sbjct: 82 RFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAF-DPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 235
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 1.149e-24 Identity = 68/161 (42.24%), Postives = 96/161 (59.63%), Query Frame = 2 Query: 2 RFRECELIHGRWAMLATLGALTVEWLTGI--------TWQDAGKVQLVEGSS--YLGQPLPFSITTLIWIEVLVIGYIEFQR-NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPLHTTIL 451 +++ ELIH RWAML G + E L W G + L++G++ Y G+ +P ++ + EV+++G E+ R + LD E +L+PGG F DPLGLA DP + A L++ EIK+ RLAM A LGF QA VTG+GP+ N A HLSDP +L Sbjct: 109 KYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPF-DPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLL 267
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 2.561e-24 Identity = 72/160 (45.00%), Postives = 91/160 (56.88%), Query Frame = 2 Query: 2 RFRECELIHGRWAMLATLGALTVEWL---TGI-----TWQDAGKVQLVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQRNSELD---PEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDPL 436 R R E+IHGRWAML LG + E L G+ W AG EG YLG P SI ++ +VL++G +E R + LD LYPGG++FDPLGLA DP A L++ EIK+ RLAM + GF QA+VTGKGP+ N HL DP+ Sbjct: 94 RNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPV 253
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 1.660e-23 Identity = 74/161 (45.96%), Postives = 93/161 (57.76%), Query Frame = 2 Query: 2 RFRECELIHGRWAMLATLGALTVEWLT---GI-----TWQDAGKVQLVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQR---NSE--LDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDP 433 R+RE ELIH RWA+L LG LT E L+ G+ W AG +G +YLG SI + ++V+++G E R SE LD LYPGG F DPLGLA DP A L++ EIK+ RLAM + LGF QA+VTGKGP+ N HL+DP Sbjct: 78 RYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPF-DPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADP 237
BLAST of CX300140 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.831e-23 Identity = 73/162 (45.06%), Postives = 93/162 (57.41%), Query Frame = 2 Query: 2 RFRECELIHGRWAMLATLGALTVEWLT---GI-----TWQDAGKVQLVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADP*KKATLQLAEIKHARLAMDAFLGFASQAVVTGKGPINNWATHLSDP 433 ++RE E+IH RWA+L LG LT E L+ G+ W AG EG YLG P +I + ++V+++G IE R LDP LYPG + FDPLGLA DP A L++ EIK+ RLAM + GF QA+VTGKGPI N A HL+DP Sbjct: 83 KYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDP---LYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADP 240 The following BLAST results are available for this feature:
BLAST of CX300140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300140 ID=CX300140; Name=CX300140; organism=Citrus clementina; type=EST; length=458bpback to top |