CX300162

Overview
NameCX300162
Unique NameCX300162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length358
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15207 contig Ccv1_Contig15207:671..1028. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300162 vs. ExPASy Swiss-Prot
Match: QORH_ARATH (Putative quinone-oxidoreductase homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g13010 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 3.124e-49
Identity = 92/114 (80.70%), Postives = 102/114 (89.47%), Query Frame = 1 
Query:   16 GHYAVQLAKLANTHVTASCGARNIEFAKSLWADEVLDYKTPDGAPLKSPSGRKYDALIHCATGIPWPTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPKRE 357
            GHYAVQLAKLAN HVTA+CGARNIEF KSL ADEVLDYKTP+GA LKSPSG+KYDA++HCA GIP+  FEPNL  NGKVIDITPGP+AM T+A+KK+T SKKQLVPLLLIPK E
Sbjct:  169 GHYAVQLAKLANAHVTATCGARNIEFVKSLGADEVLDYKTPEGAALKSPSGKKYDAVVHCANGIPFSVFEPNLSENGKVIDITPGPNAMWTYAVKKITMSKKQLVPLLLIPKAE 282
[Close]
BLAST of CX300162 vs. ExPASy Swiss-Prot
Match: QORH_SPIOL (Quinone-oxidoreductase homolog, chloroplastic OS=Spinacia oleracea GN=QOR PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 3.819e-47
Identity = 88/112 (78.57%), Postives = 99/112 (88.39%), Query Frame = 1 
Query:   16 GHYAVQLAKLANTHVTASCGARNIEFAKSLWADEVLDYKTPDGAPLKSPSGRKYDALIHCATGIPWPTFEPNLGTNGKVIDITPGPSAMLTFALKKLTFSKKQLVPLLLIPK 351
            GHYAVQLAKL NTHVTA+CGARN++F K L ADEVLDYKTP+GA L SPSG+KYD ++H A+GIPW TFEPNL   GKVID+TPGP+AM+TFA KKLTFSKKQLVPLLLIPK
Sbjct:  169 GHYAVQLAKLGNTHVTATCGARNLDFVKGLGADEVLDYKTPEGASLTSPSGKKYDYVVHGASGIPWSTFEPNLSEAGKVIDLTPGPTAMMTFAWKKLTFSKKQLVPLLLIPK 280
The following BLAST results are available for this feature:
BLAST of CX300162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
QORH_ARATH3.124e-4980.70Putative quinone-oxidoreductase homolog, chloropla... [more]
QORH_SPIOL3.819e-4778.57Quinone-oxidoreductase homolog, chloroplastic OS=S... [more]
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Properties
Property NameValue
Genbank descriptionC07007A01SK SaltLeaf1 Citrus clementina cDNA clone C07007A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300162 ID=CX300162; Name=CX300162; organism=Citrus clementina; type=EST; length=358bp
CCCCGGGCTGCAGGAGGTCACTATGCTGTTCAGTTGGCGAAGCTTGCAAA
CACGCACGTGACTGCCTCTTGTGGGGCTCGCAACATTGAATTTGCCAAGA
GTTTATGGGCTGATGAGGTTCTTGATTACAAGACACCTGACGGGGCACCT
CTAAAGAGTCCATCTGGTCGAAAATACGATGCACTGATCCACTGTGCAAC
AGGGATTCCCTGGCCTACTTTTGAGCCTAATCTGGGCACAAATGGGAAGG
TGATTGATATCACTCCTGGCCCTAGTGCGATGCTGACTTTTGCTTTGAAG
AAACTTACCTTCTCCAAAAAGCAGCTGGTACCACTGCTGCTGATTCCCAA
GCGCGAGA
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