CX300176

Overview
NameCX300176
Unique NameCX300176
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4481 contig Ccv1_Contig4481:404..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300176 vs. ExPASy Swiss-Prot
Match: DNJ20_ARATH (Chaperone protein dnaJ 20, chloroplastic OS=Arabidopsis thaliana GN=ATJ20 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.021e-16
Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:    1 ETLSDPGLRALYDRDLSMGLHLAFSARRRQQNDVD-FQVRSEWRNRWQSQLSELKRRSMNKDAGGNISWAARMRRKR 228
            ETLSDP  R LYDRDLSMG   +FS RR+ + D +  + +SEW+ +WQ+QLS L+RRS  KD    +SWAARMRR++
Sbjct:  118 ETLSDPRRRVLYDRDLSMGFSFSFSGRRQNRYDQEVVEEKSEWKAKWQTQLSGLRRRSNQKD-NNTMSWAARMRRQQ 193
The following BLAST results are available for this feature:
BLAST of CX300176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DNJ20_ARATH2.021e-1655.84Chaperone protein dnaJ 20, chloroplastic OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionC07007B04SK SaltLeaf1 Citrus clementina cDNA clone C07007B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300176 ID=CX300176; Name=CX300176; organism=Citrus clementina; type=EST; length=419bp
GAAACGCTGTCGGATCCCGGATTGCGTGCTCTCTACGATCGCGACTTGTC
CATGGGCCTTCACCTAGCTTTCTCCGCCCGAAGACGCCAGCAAAACGACG
TGGACTTTCAAGTAAGAAGCGAGTGGAGGAATCGTTGGCAATCTCAGCTG
TCTGAGCTGAAGAGAAGAAGCATGAACAAGGATGCAGGAGGAAACATTTC
ATGGGCAGCTCGAATGCGCAGGAAGAGGGATGGATTATCACAGGAGCTAT
AGATATGTTTTTATTTTATAGCTTATATAAATCTTTATTTCTACCTTGTA
GATAGGTTTTGTCGGTTTTTCTTAGGAAGAGGAAATGAAAGTGCTATGGG
GGTTTTTGAATTGCTTGGAAGAATGATAAAAGTATTTTCTAATGGAATTA
GCAGTTATCAAAACCGAAA
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