CX300228

Overview
NameCX300228
Unique NameCX300228
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length484
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300228_ssr308 microsatellite CX300228_ssr308:308..319. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig308 contig Ccv1_Contig308:31..514. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300228 vs. ExPASy Swiss-Prot
Match: PSBQ_SPIOL (Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea GN=PSBQ PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 5.015e-32
Identity = 79/143 (55.24%), Postives = 95/143 (66.43%), Query Frame = 3
Query:   57 GLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDEPRDLDLP-LKERFFIQPLSPXXXXXXXXXXXKDILNVKELID 482
            GLRG+S  QAVLEGS Q+SG NRL+ P+ SRVAV + G  +RAQQ S E ETSRRAM+G VAAG+ASGSFV+AVLA+A PI V            T NSD+ RD  LP  K+RF++QPL P            +ILNVK+ ID
Sbjct:   10 GLRGAS--QAVLEGSLQISGSNRLSGPTTSRVAVPKMGLNIRAQQVSAEAETSRRAMLGFVAAGLASGSFVKAVLAEARPIVVGPPPPLSGGLPGTENSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEILNVKQFID 150          
BLAST of CX300228 vs. ExPASy Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 1.046e-29
Identity = 77/144 (53.47%), Postives = 95/144 (65.97%), Query Frame = 3
Query:   57 GLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVA--RSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELID 482
            GLRG+S  QAVLEGS Q++G NRLN    SRV+V   R+G  +RAQQ  + PE+SRR++IGLVAAG+A GSFV+AV A+A PIKV            T NSD+ RD  L LK+RF+IQPLSP           K+I+NVK  ID
Sbjct:   10 GLRGAS--QAVLEGSLQINGSNRLNI---SRVSVGSQRTGLVIRAQQNVSVPESSRRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGPPLPSGGLPGTDNSDQARDFSLALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFID 148          
BLAST of CX300228 vs. ExPASy Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 2.666e-25
Identity = 77/144 (53.47%), Postives = 92/144 (63.89%), Query Frame = 3
Query:   57 GLRGSSHSQAVLEGSSQLSGPNRLNAPSNSRVAVA-RSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKV-XXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELID 482
            GL G+S   AVLEGS +++G +RLN   + RVAVA RS   VRAQQ+    ETSRR++IGLVAAG+A GSFVQAVLADA  IKV             T NSD+ RD  L LK+RF++QPL P           KDI+NVK LID
Sbjct:    6 GLHGAS--PAVLEGSLKINGSSRLNG--SGRVAVAQRSRLVVRAQQSE---ETSRRSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQARDFALALKDRFYLQPLPPTEAAARAKESAKDIINVKPLID 142          
BLAST of CX300228 vs. ExPASy Swiss-Prot
Match: PSBQ_ONOVI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Onobrychis viciifolia GN=PSBQ PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.547e-25
Identity = 72/145 (49.66%), Postives = 89/145 (61.38%), Query Frame = 3
Query:   78 SQAVLEGSSQL-SGPNRLNAPSNSRVAVARSGFTVRAQQ---------ASNEPETSRRAMIGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELID 482
            +  +LEGS QL SG NR  + S+SR       F VRAQQ         ++ +P+++RRAM+GLVA G+AS SFVQAVLA+A PIKV            TLNSDE RDL LPLKERF+IQPLSP           K+I+ VK+ ID
Sbjct:    6 ASGLLEGSLQLMSGSNR--SSSSSRTRGPAGVFIVRAQQQEQQQGMSSSAADPQSNRRAMLGLVATGLASASFVQAVLAEAKPIKVGGPPPPSGGLGGTLNSDEARDLKLPLKERFYIQPLSPTEAAQRQRESAKEIVAVKKFID 148          
BLAST of CX300228 vs. ExPASy Swiss-Prot
Match: PSBQ_ORYSJ (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0544800 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.085e-18
Identity = 56/131 (42.75%), Postives = 76/131 (58.02%), Query Frame = 3
Query:   93 EGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADAT-PIKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELID 482
            +G    +GP R  A   SR+AV      VRA  A+ + +T RRA++GLVA G+A G+  QA LA+A  PIK+            TLNSD+ RD DLPL+ERF++QPL P           +DI+N+K LI+
Sbjct:   13 QGVQLPAGPRR--AGGRSRLAV------VRADAAAADVQTGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPLRERFYLQPLPPAEAAARAKESAQDIINLKPLIE 135          
BLAST of CX300228 vs. ExPASy Swiss-Prot
Match: PSBQ_ORYSI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_025465 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.085e-18
Identity = 56/131 (42.75%), Postives = 76/131 (58.02%), Query Frame = 3
Query:   93 EGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNEPETSRRAMIGLVAAGVASGSFVQAVLADAT-PIKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELID 482
            +G    +GP R  A   SR+AV      VRA  A+ + +T RRA++GLVA G+A G+  QA LA+A  PIK+            TLNSD+ RD DLPL+ERF++QPL P           +DI+N+K LI+
Sbjct:   13 QGVQLPAGPRR--AGGRSRLAV------VRADAAAADVQTGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPLRERFYLQPLPPAEAAARAKESAQDIINLKPLIE 135          
BLAST of CX300228 vs. ExPASy Swiss-Prot
Match: PSBQ1_MAIZE (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.266e-15
Identity = 55/139 (39.57%), Postives = 73/139 (52.52%), Query Frame = 3
Query:   72 SHSQAVLEGSSQLSGPNRLNAPSNSRVAVARSGFTVRAQQASNE-PETSRRAMIGLVAAGVASGSFVQAVLADATP-IKVXXXXXXXXXXXXTLNSDEPRDLDLPLKERFFIQPLSPXXXXXXXXXXXKDILNVKELID 482
            + + A + G SQ   P+R  A S +R AV      VRA    +   +  RRA+IGLVA G+  G+  QA  A+    IK+            TLNSD+ RD DLPLKERF++QPL P           +DI+N+K LID
Sbjct:    2 AQAMASMTGLSQGVLPSR-RADSRTRTAVV----IVRASAEGDAVAQAGRRAVIGLVATGIVGGALSQAARAETVKTIKIGAPPPPSGGLPGTLNSDQARDFDLPLKERFYLQPLPPAEAAARVKTSAQDIINLKPLID 135          
The following BLAST results are available for this feature:
BLAST of CX300228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSBQ_SPIOL5.015e-3255.24Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ2_ARATH1.046e-2953.47Oxygen-evolving enhancer protein 3-2, chloroplasti... [more]
PSBQ1_ARATH2.666e-2553.47Oxygen-evolving enhancer protein 3-1, chloroplasti... [more]
PSBQ_ONOVI4.547e-2549.66Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ_ORYSJ1.085e-1842.75Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ_ORYSI1.085e-1842.75Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ1_MAIZE3.266e-1539.57Oxygen-evolving enhancer protein 3-1, chloroplasti... [more]
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Properties
Property NameValue
Genbank descriptionC07007F10SK SaltLeaf1 Citrus clementina cDNA clone C07007F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300228 ID=CX300228; Name=CX300228; organism=Citrus clementina; type=EST; length=484bp
AAAGTTTCTGAAACCTGATTTAGTGAAAAATGGCACAAGCTATGGCGTCA
ATGGCTGGCTTACGTGGATCCTCCCACTCGCAGGCTGTTCTTGAAGGTAG
CTCCCAGCTCAGTGGCCCAAACCGCTTGAACGCCCCTAGCAACAGCAGAG
TTGCTGTGGCTCGCTCTGGTTTCACTGTTAGAGCCCAGCAGGCATCAAAC
GAGCCTGAAACTAGCCGCCGTGCTATGATTGGTCTTGTTGCTGCAGGTGT
GGCCTCAGGTTCCTTTGTTCAAGCTGTACTTGCTGATGCCACTCCCATCA
AAGTTGGTCCTCCTCCTCCACCCTCTGGCGGATTGCCTGGAACGTTGAAC
TCTGATGAGCCAAGAGACCTGGATCTGCCACTGAAGGAGAGGTTCTTCAT
CCAACCACTTAGTCCAGCCCAGGCGGCAGAGAGAGCAAAGGCGTCAGCAA
AGGATATTCTTAATGTCAAGGAATTAATAGACAA
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