CX300239

Overview
NameCX300239
Unique NameCX300239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length541
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig32 contig Ccv1_Contig32:217..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF1_PHAVU (Profilin-1 OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 9.300e-50
Identity = 90/102 (88.24%), Postives = 98/102 (96.08%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 306
            G VWA+S +FPQ KPEEITGIMNDFNEPGTLAPTGLY+GGTKYMVIQGEPG+VIRGKKGPGGVT+KKT+ AL+IGIYDEPMTPGQCNMIVERLGDYLI+QGL
Sbjct:   30 GSVWAKSASFPQFKPEEITGIMNDFNEPGTLAPTGLYIGGTKYMVIQGEPGSVIRGKKGPGGVTVKKTNLALVIGIYDEPMTPGQCNMIVERLGDYLIEQGL 131          
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF_PRUPE (Profilin OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.586e-49
Identity = 89/102 (87.25%), Postives = 98/102 (96.08%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 306
            G VWAQS  FPQLKPEE+TGI+NDFNEPG+LAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVT+KK++ AL+IGIYDEPMTPGQCNMIVERLGDYL++QGL
Sbjct:   30 GSVWAQSATFPQLKPEEVTGILNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTVKKSTLALLIGIYDEPMTPGQCNMIVERLGDYLVEQGL 131          
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF2_SOYBN (Profilin-2 OS=Glycine max GN=PRO2 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.586e-49
Identity = 91/101 (90.10%), Postives = 95/101 (94.06%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 303
            G VW QS +FPQ KPEEIT IMNDFNEPG+LAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVT+KKT AALIIGIYDEPMTPGQCNM+VERLGDYLIDQG
Sbjct:   30 GSVWLQSTDFPQFKPEEITAIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTVKKTGAALIIGIYDEPMTPGQCNMVVERLGDYLIDQG 130          
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF1_RICCO (Profilin-1 OS=Ricinus communis GN=PRO1 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.586e-49
Identity = 92/102 (90.20%), Postives = 95/102 (93.14%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 306
            G VWAQS  FPQ KPEEIT IMNDFNEPG+LAPTGLYL GTKYMVIQGEPGAVIRGKKGPGGVT+KKT+ ALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL
Sbjct:   30 GSVWAQSSTFPQFKPEEITAIMNDFNEPGSLAPTGLYLSGTKYMVIQGEPGAVIRGKKGPGGVTVKKTNQALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 131          
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF2_MALDO (Profilin-2 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.072e-49
Identity = 89/102 (87.25%), Postives = 97/102 (95.10%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 306
            G VWAQS  FPQLKPEE+TGIMNDFNEPG+LAPTGLYLGGTKYMVIQGEPG VIRGKKGPGGVT+KK++ AL+IGIYDEPMTPGQCNM+VERLGDYLI+QGL
Sbjct:   30 GSVWAQSATFPQLKPEEVTGIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGVVIRGKKGPGGVTVKKSTMALLIGIYDEPMTPGQCNMVVERLGDYLIEQGL 131          
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF1_SOYBN (Profilin-1 OS=Glycine max GN=PRO1 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 2.706e-49
Identity = 91/101 (90.10%), Postives = 95/101 (94.06%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 303
            G VWAQS +FPQ KPEEIT IMNDFNEPG+LAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVT+KKT AALIIGIYDEPMTPGQCNM+VER GDYLIDQG
Sbjct:   30 GSVWAQSTDFPQFKPEEITAIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTVKKTGAALIIGIYDEPMTPGQCNMVVERPGDYLIDQG 130          
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF2_HEVBR (Profilin-2 OS=Hevea brasiliensis GN=PRO2 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 3.534e-49
Identity = 91/101 (90.10%), Postives = 96/101 (95.05%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 303
            G VWAQS NFPQ K EEITGIM+DF+EPGTLAPTGLY+GGTKYMVIQGEPGAVIRGKKGPGGVT+KKT+ ALIIGIYDEPMTPGQCNMIVERLGDYLIDQG
Sbjct:   30 GSVWAQSANFPQFKSEEITGIMSDFHEPGTLAPTGLYIGGTKYMVIQGEPGAVIRGKKGPGGVTVKKTNQALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 130          
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF_FRAAN (Profilin OS=Fragaria ananassa PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 4.616e-49
Identity = 89/102 (87.25%), Postives = 97/102 (95.10%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 306
            G VWAQS  FPQLKPEE+TGI+ DF+EPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVT+KKT+ AL+IGIYDEPMTPGQCNMIVERLGDYL++QGL
Sbjct:   30 GSVWAQSATFPQLKPEEVTGIVRDFDEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTVKKTTLALLIGIYDEPMTPGQCNMIVERLGDYLVEQGL 131          
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF2_AMBAR (Profilin-2 OS=Ambrosia artemisiifolia GN=A0418 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 4.616e-49
Identity = 91/101 (90.10%), Postives = 96/101 (95.05%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 303
            G VWAQS  FPQ+KPEEITGIMNDFNEPG+LAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKT+ ALIIGIYDEPM PGQCNMIVERLGDYL++QG
Sbjct:   30 GVVWAQSATFPQVKPEEITGIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTTMALIIGIYDEPMAPGQCNMIVERLGDYLLEQG 130          
BLAST of CX300239 vs. ExPASy Swiss-Prot
Match: PROF_CUCME (Profilin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.028e-48
Identity = 88/102 (86.27%), Postives = 95/102 (93.14%), Query Frame = 1
Query:    1 GKVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 306
            G VWAQS+NFPQLKPEE+ GI+ DF +PGTLAPTGLY+GGTKYMVIQGEPGAVIRGKKGPGG T+KKT  AL+IGIYDEPMTPGQCNMIVERLGDYLIDQGL
Sbjct:   30 GSVWAQSQNFPQLKPEEVAGIVGDFADPGTLAPTGLYIGGTKYMVIQGEPGAVIRGKKGPGGATVKKTGMALVIGIYDEPMTPGQCNMIVERLGDYLIDQGL 131          
The following BLAST results are available for this feature:
BLAST of CX300239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PROF1_PHAVU9.300e-5088.24Profilin-1 OS=Phaseolus vulgaris PE=1 SV=1[more]
PROF_PRUPE1.586e-4987.25Profilin OS=Prunus persica PE=1 SV=1[more]
PROF2_SOYBN1.586e-4990.10Profilin-2 OS=Glycine max GN=PRO2 PE=1 SV=1[more]
PROF1_RICCO1.586e-4990.20Profilin-1 OS=Ricinus communis GN=PRO1 PE=2 SV=1[more]
PROF2_MALDO2.072e-4987.25Profilin-2 OS=Malus domestica PE=1 SV=1[more]
PROF1_SOYBN2.706e-4990.10Profilin-1 OS=Glycine max GN=PRO1 PE=1 SV=1[more]
PROF2_HEVBR3.534e-4990.10Profilin-2 OS=Hevea brasiliensis GN=PRO2 PE=1 SV=1[more]
PROF_FRAAN4.616e-4987.25Profilin OS=Fragaria ananassa PE=1 SV=1[more]
PROF2_AMBAR4.616e-4990.10Profilin-2 OS=Ambrosia artemisiifolia GN=A0418 PE=... [more]
PROF_CUCME1.028e-4886.27Profilin OS=Cucumis melo PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC07007G09SK SaltLeaf1 Citrus clementina cDNA clone C07007G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300239 ID=CX300239; Name=CX300239; organism=Citrus clementina; type=EST; length=541bp
GGAAAGGTTTGGGCCCAGAGTGAAAACTTCCCTCAGTTAAAACCTGAGGA
AATAACTGGTATCATGAATGACTTTAATGAACCTGGAACACTAGCACCAA
CTGGACTGTATCTTGGTGGCACAAAATATATGGTGATCCAGGGTGAGCCA
GGTGCTGTCATCCGAGGGAAGAAGGGCCCTGGTGGTGTTACCATCAAGAA
GACCAGTGCAGCCTTAATCATTGGAATCTATGATGAGCCGATGACCCCTG
GGCAGTGCAACATGATTGTTGAAAGGCTTGGTGATTATCTCATTGATCAG
GGTCTTTAGGTGGTTTGCATGTCCGCTAATTTGTTTCATTTCTTGGCTTG
CCTAAAAAGCTCGCACTGTTGAACTTCGGTGTAATAATATTACAGTATTC
AAAGTTATGGGAACTGTGTGTGGAAAGGAAAGGTTTGGTGCATGTGGAAG
TTCTTGATATCATCTATTTGTAGTATTGTTATGGGTGTCAAGGTACTTTA
CCAATCACTATTACAGTGGATCCTAATGGATGTGTCAATTT
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