CX300255

Overview
NameCX300255
Unique NameCX300255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length377
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9189 contig Ccv1_Contig9189:82..458. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX300255 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.187e-17
Identity = 48/103 (46.60%), Postives = 61/103 (59.22%), Query Frame = 3 
Query:   69 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPN 377
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PN
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPN 92
The following BLAST results are available for this feature:
BLAST of CX300255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN3.187e-1746.60Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionC07008A03SK NTLeaf1 Citrus clementina cDNA clone C07008A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300255 ID=CX300255; Name=CX300255; organism=Citrus clementina; type=EST; length=377bp
CTCGTGCCGAATTCGGCACGAGGGAGGTTAAAGATTTAGAAACTAGCAGC
TAAATTGTAAATTTAAAGATGCTAGAGAAGCTTTGGGACGATGTTGTGGC
AGGGCCTCAGCCTGATCGTGGCCTTGGCAGGCTGAGGAAAATCACCACAA
CACCCTTAGCAGTCAAAGAGGGTGGTGAGGCGGAGTCGTCGTCGGGCAAG
TTCCAGAGGTCTCTGTCAATGCCAGCGAGTCCAGGGGCACCGTCGACGCC
AGTGACGCCGACGACGCCGCTGTCGGCGCGTAAGGACAACGTGTGGAGGA
GCGTGTTTCACCCCGGTAGCAACCTTGCTACTAGGGGTATCGGTGCAGAG
GTCTTTGACAAGCCCACACATCCTAAC
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