CX300256

Overview
NameCX300256
Unique NameCX300256
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length383
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14793 contig Ccv1_Contig14793:87..469. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300256 vs. ExPASy Swiss-Prot
Match: PSC13_MAIZE (Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.241e-21
Identity = 45/98 (45.92%), Postives = 68/98 (69.39%), Query Frame = 2
Query:   89 PNTKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVI 382
            PN   + ++GRVYCDTC+AGF T  T YIAGAKV++ECK   + ++  + +G TD+TGTY I + + H++ +C  VL++SP+ DC  V   R+R+ V+
Sbjct:   30 PNLPDYVIQGRVYCDTCRAGFVTNVTEYIAGAKVRLECKHFGTGKLERAIDGVTDATGTYTIELKDSHEEDICQVVLVASPRKDCDEVQALRDRAGVL 127          
BLAST of CX300256 vs. ExPASy Swiss-Prot
Match: LAT52_SOLLC (Anther-specific protein LAT52 OS=Solanum lycopersicum GN=LAT52 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.832e-19
Identity = 38/92 (41.30%), Postives = 60/92 (65.22%), Query Frame = 2
Query:  104 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRV 379
            F VEG+VYCDTC+  FET  +  + GA VK++C++  +    +S EG TD  G YK+ V+ DH++ +C+  ++ SP+ DCK    G E++R+
Sbjct:   27 FDVEGKVYCDTCRVQFETKLSENLEGATVKLQCRNISTEAETFSVEGVTDKDGKYKLTVNGDHENDICEVTVVKSPREDCKESVSGYEKARI 118          
BLAST of CX300256 vs. ExPASy Swiss-Prot
Match: OLEE1_BETVE (Olee1-like protein OS=Betula verrucosa PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.324e-18
Identity = 37/84 (44.05%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  104 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVA 355
            F VEG+VYCD C+  F T  +TY+ GAKV +EC++R+   ++YS + +TD +GTY+I V  DH++++C+  L  S   DC  V+
Sbjct:   27 FFVEGKVYCDNCRTQFVTKLSTYMKGAKVSLECRNREGGTLIYSSDSETDKSGTYRIPVDGDHEEEICEIALKKSSDPDCSEVS 110          
BLAST of CX300256 vs. ExPASy Swiss-Prot
Match: ALL1_OLEEU (Major pollen allergen OS=Olea europaea PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.854e-17
Identity = 35/89 (39.33%), Postives = 59/89 (66.29%), Query Frame = 2
Query:   86 RPNTKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTV 352
            +P    F ++G+VYCDTC+AGF T  + +I GA ++++CKD+++  V ++  G T + G Y +LV  DH+++ C+  LISS + DC  +
Sbjct:    5 QPPVSQFHIQGQVYCDTCRAGFITELSEFIPGASLRLQCKDKENGDVTFTEVGYTRAEGLYSMLVERDHKNEFCEITLISSGRKDCNEI 93          
BLAST of CX300256 vs. ExPASy Swiss-Prot
Match: PHLB_PHLPR (Pollen allergen Phl p 11 OS=Phleum pratense PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.046e-17
Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = 2
Query:  104 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRV 379
            F V GRVYCD C+AGFET  +  + GA V V+C+     +     E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV
Sbjct:    6 FVVTGRVYCDPCRAGFETNVSHNVQGATVAVDCRPFNGGESKLKAEATTDGLGWYKIEIDQDHQEEICEVVLAKSPDTTCSEIEEFRDRARV 97          
BLAST of CX300256 vs. ExPASy Swiss-Prot
Match: LOLB_LOLPR (Major pollen allergen Lol p 11 OS=Lolium perenne PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.046e-17
Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = 2
Query:  104 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRV 379
            F V GRVYCD C+AGFET  +  + GA V V+C+     +     E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV
Sbjct:    6 FVVTGRVYCDPCRAGFETNVSHNVEGATVAVDCRPFDGGESKLKAEATTDKDGWYKIEIDQDHQEEICEVVLAKSPDKSCSEIEEFRDRARV 97          
BLAST of CX300256 vs. ExPASy Swiss-Prot
Match: LIGV1_LIGVU (Major pollen allergen Lig v 1 OS=Ligustrum vulgare PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.497e-16
Identity = 34/89 (38.20%), Postives = 58/89 (65.17%), Query Frame = 2
Query:   86 RPNTKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTV 352
            +P    F ++G+VYCDTC+A F T  + +I GA V+++CKD ++ +V ++  G T + G Y +L+  DH+++ C+  LISS + DC  +
Sbjct:    5 QPPVSQFYIQGQVYCDTCRARFITELSEFIPGAGVRLQCKDGENGKVTFTEVGYTKAEGLYNMLIERDHKNEFCEITLISSSRKDCDEI 93          
BLAST of CX300256 vs. ExPASy Swiss-Prot
Match: CHE1_CHEAL (Pollen allergen Che a 1 OS=Chenopodium album PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.624e-13
Identity = 33/84 (39.29%), Postives = 50/84 (59.52%), Query Frame = 2
Query:  104 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVA 355
            F V+G VYCDTC+  F T  +T + GA VK+EC++  +    +  E  TD  G Y I V+ D +D +C+  L+ SP ++C  V+
Sbjct:   30 FKVQGMVYCDTCRIQFMTRISTIMEGATVKLECRNITAGTQTFKAEAVTDKVGQYSIPVNGDFEDDICEIELVKSPNSECSEVS 113          
The following BLAST results are available for this feature:
BLAST of CX300256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSC13_MAIZE1.241e-2145.92Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE... [more]
LAT52_SOLLC9.832e-1941.30Anther-specific protein LAT52 OS=Solanum lycopersi... [more]
OLEE1_BETVE8.324e-1844.05Olee1-like protein OS=Betula verrucosa PE=2 SV=1[more]
ALL1_OLEEU1.854e-1739.33Major pollen allergen OS=Olea europaea PE=1 SV=2[more]
PHLB_PHLPR7.046e-1742.39Pollen allergen Phl p 11 OS=Phleum pratense PE=1 S... [more]
LOLB_LOLPR7.046e-1742.39Major pollen allergen Lol p 11 OS=Lolium perenne P... [more]
LIGV1_LIGVU3.497e-1638.20Major pollen allergen Lig v 1 OS=Ligustrum vulgare... [more]
CHE1_CHEAL1.624e-1339.29Pollen allergen Che a 1 OS=Chenopodium album PE=1 ... [more]
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Properties
Property NameValue
Genbank descriptionC07008A04SK NTLeaf1 Citrus clementina cDNA clone C07008A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300256 ID=CX300256; Name=CX300256; organism=Citrus clementina; type=EST; length=383bp
AGCTTCCTTCATCTCCCATAAGACAATGGCTAGAACATTGTTGTTGATCG
CTCTCTGCGTGCTGCCGGCTCTGGTGAGCGCGGTCCGGCCCAACACTAAA
CCGTTCTCGGTTGAAGGACGCGTGTACTGCGACACCTGCCAAGCCGGCTT
TGAGACCCCCGCTACCACCTACATCGCCGGTGCCAAGGTTAAGGTTGAAT
GCAAAGACAGGAAGTCAATGCAAGTAGTATATAGCAGGGAAGGGAAAACA
GACTCAACTGGAACATATAAGATCCTCGTTTCAGAAGACCATCAGGATCA
ACTTTGCGATGCTGTCCTCATTAGTAGCCCCCAGAATGACTGCAAAACAG
TTGCCCCAGGGCGTGAGCGTTCCCGTGTGATCT
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