CX300258

Overview
NameCX300258
Unique NameCX300258
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length393
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig696 contig Ccv1_Contig696:395..787. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300258 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.817e-33
Identity = 71/91 (78.02%), Postives = 80/91 (87.91%), Query Frame = -1
Query:  121 AMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 393
            AMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS   M+SDAE WNGR AMLGLVALAFTEFVKG +LV
Sbjct:  106 AMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of CX300258 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.881e-30
Identity = 59/91 (64.84%), Postives = 81/91 (89.01%), Query Frame = -1
Query:  121 AMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 393
            AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALAFTE+VKGG L+
Sbjct:  107 AMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of CX300258 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.908e-23
Identity = 55/93 (59.14%), Postives = 69/93 (74.19%), Query Frame = -1
Query:  121 AMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 393
            AM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAELWNGRFAMLGLVALA TEF+ G   V
Sbjct:  137 AMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of CX300258 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.304e-20
Identity = 49/92 (53.26%), Postives = 63/92 (68.48%), Query Frame = -1
Query:  121 AMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 393
            AM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAMLGLVALA TE + G   +
Sbjct:   79 AMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          
BLAST of CX300258 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.133e-20
Identity = 48/88 (54.55%), Postives = 62/88 (70.45%), Query Frame = -1
Query:  133 AMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKG 393
            AM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G
Sbjct:   74 AMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITG 161          
BLAST of CX300258 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.688e-11
Identity = 42/89 (47.19%), Postives = 52/89 (58.43%), Query Frame = -1
Query:  133 AMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSD--GFMTSDAELWNGRFAMLGLVALAFTEFVKG 393
            AM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F       K D  G  T DAE+ NGRFAM+G  A+   E ++G
Sbjct:   85 AMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQG 168          
The following BLAST results are available for this feature:
BLAST of CX300258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA1.817e-3378.02Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL1.881e-3064.84Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU2.908e-2359.14High molecular mass early light-inducible protein ... [more]
ELI9_HORVU2.304e-2053.26Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU5.133e-2054.55Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA5.688e-1147.19Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionC07008A06SK NTLeaf1 Citrus clementina cDNA clone C07008A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300258 ID=CX300258; Name=CX300258; organism=Citrus clementina; type=EST; length=393bp
CCCGGGCTGCAGGTTTTTTTTTTTTTTTTTTGAGAAATAGAGATTTAATT
ACAGTAGGATCTCATACATTAATTAGTTAAAAAAAATACAGATCTACAGA
TCTAAACAAAATTAAGCTTAAACAAGGGTGCCACCCTTAACAAACTCGGT
GAAAGCCAAAGCAACAAGGCCCAGCATAGCAAACCTCCCATTCCACAACT
CAGCATCCGAAGTCATGAACCCATCCGATTTAGACTCCACGCTGACACCT
TTAAACAAAGGAACCAGGGACGCAACCGTGAGCAAAACACTGGTCCCCAA
GAACCAGGCAACCCCACCGTCTGATAACTGGGCAAACACATCCTGACCCT
TGGATATCTCCACCCCCAATGCAGCCACGAACCCAATCATCGC
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