CX300260
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 6.875e-49 Identity = 93/113 (82.30%), Postives = 101/113 (89.38%), Query Frame = 3 Query: 3 GPEAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIAEIVLVSGAEYYTITHGLHLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 GPEAVWFKTGALLLDG+ LNYFG NIP+NLV AV+AE+VL+ GAEYY IT+GL EDKLHPGGPFDPLGLAKDP+Q ALLKV EIKNG LAMFAML F+QAYVTGEGPVENL Sbjct: 142 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENL 254
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 6.480e-23 Identity = 61/118 (51.69%), Postives = 73/118 (61.86%), Query Frame = 3 Query: 3 GPEAVWFKTGALLLDGHPLNYFG---LNIPLNLVFAVIAEIVLVSGAEYYTITHGLHLE--DKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 G A+WFK GA + LNY G L N+V + ++VL+ E Y + G E D L+PG FDPLGLA DPD FA LKV EIKNG LAMFA L F+QA VTG+GP+ENL Sbjct: 134 GDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENL 251
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 1.105e-22 Identity = 61/118 (51.69%), Postives = 74/118 (62.71%), Query Frame = 3 Query: 9 EAVWFKTGALLLDGHPLNYFG---LNIPLNLVFAVIAEIVLVSGAEYYTITHG----LHLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 E VWFK GA + LNY G L +++ + ++VL+ AE Y G L D L+PGGPFDPLGLA DPD FA LKV EIKNG LAMF+ L F+QA VTG+GPV+NL Sbjct: 113 EPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNL 230
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 5.486e-22 Identity = 59/117 (50.43%), Postives = 75/117 (64.10%), Query Frame = 3 Query: 9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 EAVWFK GA + L+Y G N L +++A ++VL+ E Y + G + D ++PGG FDPLGLA DPD FA LKV EIKNG LAMF+M F+QA VTG+GP+ENL Sbjct: 130 EAVWFKAGAQIFSEGGLDYLG-NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 245
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 5.486e-22 Identity = 58/117 (49.57%), Postives = 76/117 (64.96%), Query Frame = 3 Query: 9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 EAVWFK GA + L+Y G N L +++A +++L+ E Y I G + D ++PGG FDPLGLA+DP+ FA LKV EIKNG LAMF+M F+QA VTG+GP+ENL Sbjct: 136 EAVWFKAGAQIFSEGGLDYLG-NPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 251
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 5.486e-22 Identity = 58/116 (50.00%), Postives = 74/116 (63.79%), Query Frame = 3 Query: 9 EAVWFKTGALLLDGHPLNYFGLN--IPLNLVFAVIA-EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 EAVWFK GA + L+Y G I + A+ A +++L+ E Y + G + D ++PGG FDPLGLA DPD FA LKV EIKNG LAMF+M F+QA VTG+GP+ENL Sbjct: 140 EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 255
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 9.357e-22 Identity = 60/117 (51.28%), Postives = 76/117 (64.96%), Query Frame = 3 Query: 9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGLHLE--DKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 EAVWFK GA + L+Y G N L +++A ++VL+ E Y + G E D L+PGG FDPLGLA+DP+ FA LKV EIKNG LAMF+M F+QA VTG+GP+ENL Sbjct: 129 EAVWFKAGAQIFSEGGLDYLG-NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 1.222e-21 Identity = 59/117 (50.43%), Postives = 76/117 (64.96%), Query Frame = 3 Query: 9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 EAVWFK G+ + L+Y G N L +++A ++VL+ E Y I G + D L+PGG FDPLGLA+DP+ FA LKV EIKNG LAMF+M F+QA VTG+GP+ENL Sbjct: 127 EAVWFKAGSQIFSEGGLDYLG-NPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 1.222e-21 Identity = 62/119 (52.10%), Postives = 77/119 (64.71%), Query Frame = 3 Query: 9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFA--VIA----EIVLVSGAEYYTITHGLHLE--DKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 EAVWFK GA + L+Y G NLV A ++A ++VL+ E Y + G E DK++PGG FDPLGLA DPD FA LKV E+KNG LAMF+M F+QA VTG+GP+ENL Sbjct: 125 EAVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 240
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 1.222e-21 Identity = 62/119 (52.10%), Postives = 77/119 (64.71%), Query Frame = 3 Query: 9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFA--VIA----EIVLVSGAEYYTITHGLHLE--DKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341 EAVWFK GA + L+Y G NLV A ++A ++VL+ E Y + G E DK++PGG FDPLGLA DPD FA LKV E+KNG LAMF+M F+QA VTG+GP+ENL Sbjct: 125 EAVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 240 The following BLAST results are available for this feature:
BLAST of CX300260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300260 ID=CX300260; Name=CX300260; organism=Citrus clementina; type=EST; length=341bpback to top |