CX300260

Overview
NameCX300260
Unique NameCX300260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length341
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9360 contig Ccv1_Contig9360:524..864. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 6.875e-49
Identity = 93/113 (82.30%), Postives = 101/113 (89.38%), Query Frame = 3
Query:    3 GPEAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIAEIVLVSGAEYYTITHGLHLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            GPEAVWFKTGALLLDG+ LNYFG NIP+NLV AV+AE+VL+ GAEYY IT+GL  EDKLHPGGPFDPLGLAKDP+Q ALLKV EIKNG LAMFAML  F+QAYVTGEGPVENL
Sbjct:  142 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENL 254          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.480e-23
Identity = 61/118 (51.69%), Postives = 73/118 (61.86%), Query Frame = 3
Query:    3 GPEAVWFKTGALLLDGHPLNYFG---LNIPLNLVFAVIAEIVLVSGAEYYTITHGLHLE--DKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            G  A+WFK GA +     LNY G   L    N+V  +  ++VL+   E Y +  G   E  D L+PG  FDPLGLA DPD FA LKV EIKNG LAMFA L  F+QA VTG+GP+ENL
Sbjct:  134 GDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENL 251          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.105e-22
Identity = 61/118 (51.69%), Postives = 74/118 (62.71%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFG---LNIPLNLVFAVIAEIVLVSGAEYYTITHG----LHLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            E VWFK GA +     LNY G   L    +++  +  ++VL+  AE Y    G    L   D L+PGGPFDPLGLA DPD FA LKV EIKNG LAMF+ L  F+QA VTG+GPV+NL
Sbjct:  113 EPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNL 230          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.486e-22
Identity = 59/117 (50.43%), Postives = 75/117 (64.10%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK GA +     L+Y G N  L    +++A    ++VL+   E Y +  G    + D ++PGG FDPLGLA DPD FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  130 EAVWFKAGAQIFSEGGLDYLG-NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 245          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.486e-22
Identity = 58/117 (49.57%), Postives = 76/117 (64.96%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK GA +     L+Y G N  L    +++A    +++L+   E Y I  G    + D ++PGG FDPLGLA+DP+ FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  136 EAVWFKAGAQIFSEGGLDYLG-NPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 251          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.486e-22
Identity = 58/116 (50.00%), Postives = 74/116 (63.79%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLN--IPLNLVFAVIA-EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK GA +     L+Y G    I    + A+ A +++L+   E Y +  G    + D ++PGG FDPLGLA DPD FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  140 EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 255          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.357e-22
Identity = 60/117 (51.28%), Postives = 76/117 (64.96%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGLHLE--DKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK GA +     L+Y G N  L    +++A    ++VL+   E Y +  G   E  D L+PGG FDPLGLA+DP+ FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  129 EAVWFKAGAQIFSEGGLDYLG-NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.222e-21
Identity = 59/117 (50.43%), Postives = 76/117 (64.96%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFAVIA----EIVLVSGAEYYTITHGL--HLEDKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK G+ +     L+Y G N  L    +++A    ++VL+   E Y I  G    + D L+PGG FDPLGLA+DP+ FA LKV EIKNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  127 EAVWFKAGSQIFSEGGLDYLG-NPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.222e-21
Identity = 62/119 (52.10%), Postives = 77/119 (64.71%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFA--VIA----EIVLVSGAEYYTITHGLHLE--DKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK GA +     L+Y G     NLV A  ++A    ++VL+   E Y +  G   E  DK++PGG FDPLGLA DPD FA LKV E+KNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  125 EAVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 240          
BLAST of CX300260 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.222e-21
Identity = 62/119 (52.10%), Postives = 77/119 (64.71%), Query Frame = 3
Query:    9 EAVWFKTGALLLDGHPLNYFGLNIPLNLVFA--VIA----EIVLVSGAEYYTITHGLHLE--DKLHPGGPFDPLGLAKDPDQFALLKV*EIKNGTLAMFAMLELFLQAYVTGEGPVENL 341
            EAVWFK GA +     L+Y G     NLV A  ++A    ++VL+   E Y +  G   E  DK++PGG FDPLGLA DPD FA LKV E+KNG LAMF+M   F+QA VTG+GP+ENL
Sbjct:  125 EAVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 240          
The following BLAST results are available for this feature:
BLAST of CX300260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB26_ARATH6.875e-4982.30Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB2_DUNSA6.480e-2351.69Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE1.105e-2251.69Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_PHYPA5.486e-2250.43Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2B_PINSY5.486e-2249.57Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_PINSY5.486e-2250.00Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB23_PETSP9.357e-2251.28Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB2B_SOLLC1.222e-2150.43Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB23_ORYSJ1.222e-2152.10Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.222e-2152.10Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionC07008A09SK NTLeaf1 Citrus clementina cDNA clone C07008A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300260 ID=CX300260; Name=CX300260; organism=Citrus clementina; type=EST; length=341bp
GTGGTCCTGAAGCTGTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGA
CACCCATTGAACTACTTCGGACTGAACATCCCACTCAACCTTGTTTTTGC
TGTCATTGCTGAGATTGTTCTTGTAAGTGGCGCTGAATATTATACAATCA
CCCACGGATTGCATTTGGAGGACAAGCTTCACCCAGGTGGTCCATTTGAC
CCACTGGGATTAGCAAAGGATCCTGACCAATTTGCATTGCTAAAAGTGTA
GGAAATCAAGAATGGAACACTTGCAATGTTTGCCATGCTTGAGCTCTTTC
TCCAAGCTTATGTCACAGGTGAAGGTCCAGTTGAGAACCTT
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