CX300262

Overview
NameCX300262
Unique NameCX300262
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length413
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX300262 vs. ExPASy Swiss-Prot
Match: TRXL5_ARATH (Thioredoxin-like 5, chloroplastic OS=Arabidopsis thaliana GN=At5g06690 PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 3.687e-42
Identity = 75/109 (68.81%), Postives = 96/109 (88.07%), Query Frame = 3 
Query:   87 EALWPDLSRPTSVELEPINDSDHLDQILVRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGG 413
            +A W ++++PT++E+EPIN+ + LD +L  A++LSQPI+I+WMASWCRKCIYLKPKLEKLAAE++ + KFYYVDVNKV + LVKRGNISKMPTIQ+WK+ EMK EVIGG
Sbjct:   59 KAFWSNIAQPTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAKFYYVDVNKVPQTLVKRGNISKMPTIQLWKEDEMKEEVIGG 167
[Close]
BLAST of CX300262 vs. ExPASy Swiss-Prot
Match: TRXL8_ARATH (Thioredoxin-like 8, chloroplastic OS=Arabidopsis thaliana GN=At5g04260 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.314e-31
Identity = 61/100 (61.00%), Postives = 78/100 (78.00%), Query Frame = 3 
Query:  114 PTSVELEPINDSDHLDQILVRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGG 413
            P SVEL PI    H DQ++  AQ+L + ++I WMA+WCRKCIYLKPKLEKLAAEF  +L+FY+VDVN V   LV R  ++KMPTIQ+W+DG+ ++EVIGG
Sbjct:   73 PVSVELGPICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLRFYHVDVNAVPYRLVSRAGVTKMPTIQLWRDGQKQAEVIGG 172
The following BLAST results are available for this feature:
BLAST of CX300262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TRXL5_ARATH3.687e-4268.81Thioredoxin-like 5, chloroplastic OS=Arabidopsis t... [more]
TRXL8_ARATH1.314e-3161.00Thioredoxin-like 8, chloroplastic OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC07008A11SK NTLeaf1 Citrus clementina cDNA clone C07008A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300262 ID=CX300262; Name=CX300262; organism=Citrus clementina; type=EST; length=413bp
GCTGTTTGTTATTGCAAAAAAATGCTGCCTTCTTTTGGGTTGATACTGCT
TCTCGAAGCAAGAGTGTGAGGAGAGACGTGAGAGTTGAAGCTCTGTGGCC
AGATTTGTCGAGACCCACTTCTGTTGAATTGGAACCCATCAACGACTCGG
ATCATCTTGATCAGATTCTCGTTCGTGCTCAAGAACTCTCTCAGCCTATC
CTTATTGACTGGATGGCTTCGTGGTGCCGAAAATGCATATATTTGAAGCC
TAAGCTGGAGAAATTGGCCGCTGAGTTTGATACCAAATTGAAATTTTATT
ACGTGGATGTAAACAAGGTATCTAAAGATCTAGTTAAGCGTGGCAACATC
TCTAAAATGCCAACAATTCAGATATGGAAAGATGGAGAAATGAAATCAGA
AGTTATAGGGGGG
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