CX300263

Overview
NameCX300263
Unique NameCX300263
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length346
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300263 vs. ExPASy Swiss-Prot
Match: TRXL5_ARATH (Thioredoxin-like 5, chloroplastic OS=Arabidopsis thaliana GN=At5g06690 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.635e-19
Identity = 48/111 (43.24%), Postives = 70/111 (63.06%), Query Frame = 2 
Query:   23 LRKKAGL---FWADTACPSTSVRSDVRVEALWPDLTRPTYDEVEPINDSNHHDQILDRAQELSQAILIDWMASRRRICIYMTPNLEKSAGECDTKWKFYYVDVNKVSKDLV 346
            L KK G     +++     + +  + R++A W ++ +PT  E+EPIN+    D +L  A++LSQ I+I+WMAS  R CIY+ P LEK A E + + KFYYVDVNKV + LV
Sbjct:   31 LEKKCGFCVSVYSNEKLGRSHMEKEWRLKAFWSNIAQPTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAKFYYVDVNKVPQTLV 141
[Close]
BLAST of CX300263 vs. ExPASy Swiss-Prot
Match: TRXL8_ARATH (Thioredoxin-like 8, chloroplastic OS=Arabidopsis thaliana GN=At5g04260 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.311e-11
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 2 
Query:  125 PTYDEVEPINDSNHHDQILDRAQELSQAILIDWMASRRRICIYMTPNLEKSAGECDTKWKFYYVDVNKVSKDLV 346
            P   E+ PI   +H DQ+++ AQ+L ++++I WMA+  R CIY+ P LEK A E   + +FY+VDVN V   LV
Sbjct:   73 PVSVELGPICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLRFYHVDVNAVPYRLV 146
The following BLAST results are available for this feature:
BLAST of CX300263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TRXL5_ARATH5.635e-1943.24Thioredoxin-like 5, chloroplastic OS=Arabidopsis t... [more]
TRXL8_ARATH3.311e-1144.59Thioredoxin-like 8, chloroplastic OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC07008A12SK NTLeaf1 Citrus clementina cDNA clone C07008A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300263 ID=CX300263; Name=CX300263; organism=Citrus clementina; type=EST; length=346bp
TCGGCACGAGGGCTGTTGGCTATTGCGAAAAAAGGCTGGCTTGTTTTGGG
CTGATACTGCTTGTCCCAGCACGAGTGTGAGGAGCGACGTGAGAGTAGAA
GCTCTGTGGCCAGATTTGACGAGACCCACTTATGATGAAGTGGAACCCAT
CAACGACTCGAATCATCATGATCAGATTCTCGATCGAGCTCAAGAACTCT
CTCAGGCTATCCTTATTGACTGGATGGCTTCGCGGCGCCGAATATGCATA
TATATGACGCCTAACCTGGAGAAATCGGCCGGTGAGTGCGATACCAAATG
GAAATTTTATTACGTGGATGTAAACAAGGTATCTAAAGATCTAGTT
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