CX300270

Overview
NameCX300270
Unique NameCX300270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length439
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: LRCH4_HUMAN (Leucine-rich repeat and calponin homology domain-containing protein 4 OS=Homo sapiens GN=LRCH4 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 3.225e-15
Identity = 47/124 (37.90%), Postives = 71/124 (57.26%), Query Frame = 3
Query:   12 LEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM 383
            L +L +  N++  LP  IG L  L++LDVS NEL+S+   LC   SL+ LNV  N   L  LP  +G+L ++ +LD S +++  +P SF  L  L+V   D  PL+ PP QV   G   + +++
Sbjct:  138 LRVLIVSNNKLGALPPDIGTLGSLRQLDVSSNELQSLPSELCGLSSLRDLNVRRN--QLSTLPEELGDLPLV-RLDFSCNRVSRIPVSFCRLRHLQVILLDSNPLQSPPAQVCLKGKLHIFKYL 258          
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: LRCH4_MOUSE (Leucine-rich repeat and calponin homology domain-containing protein 4 OS=Mus musculus GN=Lrch4 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.730e-14
Identity = 48/133 (36.09%), Postives = 72/133 (54.14%), Query Frame = 3
Query:   12 LEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFMVDLVANRDA 410
            L +L +  N++  LP  I  L  L++LDVS NEL+S+   LC   SL+ LNV  N   L  LP  +G+L ++ +LD S ++I  +P SF  L  L+V   D  PL+ PP Q+   G   + +++      R A
Sbjct:  138 LRVLIISNNKLGALPPDISTLGSLRQLDVSSNELQSLPVELCSLRSLRDLNVRRN--QLSTLPDELGDLPLV-RLDFSCNRISRIPVSFCRLRHLQVVLLDSNPLQSPPAQICLKGKLHIFKYLTMEAGRRGA 267          
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: MFHA1_XENTR (Malignant fibrous histiocytoma-amplified sequence 1 homolog OS=Xenopus tropicalis GN=mfhas1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.657e-14
Identity = 47/123 (38.21%), Postives = 69/123 (56.10%), Query Frame = 3
Query:   12 LEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQF 380
            L +L L  N+   +PT + +L +L ELD+S+N L  +TE +     LKKL + +N   LR LPR +G L  LE+LD+S +QI  LPD+ + L  LR    D   L   P+Q+  + A   + F
Sbjct:   80 LHVLILRRNKFLNVPTAVYHLGRLTELDISYNRLSCLTEAVGLLGKLKKLCLSHN--QLRTLPRQLGMLVDLEELDVSFNQITHLPDTMQGLPSLRTLDLDHNELCSFPQQLFHVPALEELDF 200          

HSP 2 Score: 68.1662 bits (165), Expect = 1.656e-11
Identity = 44/136 (32.35%), Postives = 70/136 (51.47%), Query Frame = 3
Query:    3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFMVDLVANRDA 410
            L+ L++L +  N  +  P  +  L  L+EL +S N L  + E +     L  L + NN   +R LP SI  L  LE+L +  +QI ILPD F  LSK+ +++  + PL  PP +V   G   +  +  +L  ++ A
Sbjct:  262 LQKLKMLNVSSNAFQDFPVPLLQLVDLEELYMSRNRLVVLPEVISCMTKLVTLWLDNN--RIRYLPDSIVELSFLEELVLQGNQIAILPDDFGKLSKVNIWKIKDNPLIQPPYEVCMKGISYIAAYQKELAHSQPA 395          
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: LRCH2_MOUSE (Leucine-rich repeat and calponin homology domain-containing protein 2 OS=Mus musculus GN=Lrch2 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.657e-14
Identity = 45/140 (32.14%), Postives = 78/140 (55.71%), Query Frame = 3
Query:   12 LEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM-VDLVANRDAKSQPVD 428
            L++L +  N++  +P  IG L  L ELDVS NE++ + + +    SLK+LN+  N  +L  LP  +G+L ++ +LD S +++  +P  +R L  L+V   D  PL+VPP Q+   G   + +++ +      D K   +D
Sbjct:  189 LKVLVVSNNKLVSIPEEIGKLKDLMELDVSCNEIQVLPQQMGKLHSLKELNIRRN--NLHVLPDELGDLPLV-KLDFSCNKVTEIPVCYRKLHHLQVIILDNNPLQVPPAQICLKGKVHIFKYLNIQACCRMDKKPDSLD 325          
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: SHOC2_DANRE (Leucine-rich repeat protein SHOC-2 OS=Danio rerio GN=shoc2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.083e-14
Identity = 52/149 (34.90%), Postives = 73/149 (48.99%), Query Frame = 3
Query:    3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFAD---------------------LRALPRSIGNLEMLEQLDISDD-QIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM 383
            L  LE+LTL  N +K LP  IGNL KL+ELD+  N+LES+   + +   L+KL + NN                        L+ LP  IG LE LE L ++D+  +  LP    L SKL +   +  PL   P Q+   G   ++QF+
Sbjct:  403 LVSLEMLTLSNNLLKKLPYGIGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGHLTNLTYLGLGENLLQHLPEEIGTLENLEDLYLNDNPNLHSLPFELALCSKLSIMSIENCPLSHLPPQIVAGGPSFIIQFL 551          

HSP 2 Score: 67.3958 bits (163), Expect = 2.826e-11
Identity = 38/115 (33.04%), Postives = 60/115 (52.17%), Query Frame = 3
Query:   12 LEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKL 356
            L  L +  N++  LP   G  T + EL+++ N+L  I E++C  VSL+ L + NN   L+ LP  IGNL  L +LD+ ++++  LP+    L  L+        L   PR +  L
Sbjct:  360 LSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDICGLVSLEMLTLSNNL--LKKLPYGIGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGHL 472          
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: LRSM1_HUMAN (E3 ubiquitin-protein ligase LRSAM1 OS=Homo sapiens GN=LRSAM1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.944e-14
Identity = 42/127 (33.07%), Postives = 71/127 (55.91%), Query Frame = 3
Query:    3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM 383
            L  +++L LH N++  LP  +G LT L+ L+V  N+L  +  ++     L+ LNV +N   L+ LP ++G L  L  L+IS ++I+ LP     +  L +   D + +  PPR+V   G  A++QF+
Sbjct:   80 LATIKVLDLHDNQLTALPDDLGQLTALQVLNVERNQLMQLPRSIGNLTQLQTLNVKDN--KLKELPDTVGELRSLRTLNISGNEIQRLPQMLAHVRTLEMLSLDASAMVYPPREVCGAGTAAILQFL 204          
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: Y0138_DICDI (Probable serine/threonine-protein kinase DDB_G0278509 OS=Dictyostelium discoideum GN=DDB_G0278509 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.038e-13
Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = 3
Query:    3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPL 326
            L  L  LT+  N+IK LP  I NL+ L EL+ S N +E + +++C+  +LKKLN+ NN  +L+ LP +IG L  L  L + ++QI  LP SF     +R   TD  PL
Sbjct:  617 LSRLAKLTISNNKIKQLPFAINNLSSLIELNASNNVIELLPDSICYLSNLKKLNLNNN--NLKELPSNIGFLTKLVDLQLYNNQISSLPISFLKCRSIREIGTDGNPL 722          
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: LRCH2_HUMAN (Leucine-rich repeat and calponin homology domain-containing protein 2 OS=Homo sapiens GN=LRCH2 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.355e-13
Identity = 43/140 (30.71%), Postives = 78/140 (55.71%), Query Frame = 3
Query:   12 LEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM-VDLVANRDAKSQPVD 428
            L++L +  N++  +P  IG L  L ELD+S NE++ + + +    SL++LN+  N  +L  LP  +G+L ++ +LD S +++  +P  +R L  L+V   D  PL+VPP Q+   G   + +++ +      D K   +D
Sbjct:  181 LKVLVVSNNKLVSIPEEIGKLKDLMELDISCNEIQVLPQQMGKLHSLRELNIRRN--NLHVLPDELGDLPLV-KLDFSCNKVTEIPVCYRKLHHLQVIILDNNPLQVPPAQICLKGKVHIFKYLNIQACCRMDKKPDSLD 317          
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: PATS1_DICDI (Probable serine/threonine-protein kinase pats1 OS=Dictyostelium discoideum GN=pats1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.770e-13
Identity = 47/157 (29.94%), Postives = 80/157 (50.96%), Query Frame = 3
Query:    3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFAD---------------------LRALPRSIGNLEMLEQLDISDD-QIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFMVDLVANRD 407
            L+ LE L L +N +  LP +   LT L+EL +SFN +  +   +CF ++LKKL +  N                        L +LP SIG L  L  L+++++ Q+  L  +  LLS L   + D T L+ PP ++  LG ++++ ++ DL+  ++
Sbjct: 1562 LKSLEKLYLDFNSLVTLPHSFRQLTNLEELSLSFNSMTELPREVCFLINLKKLMIEGNQIQFLPNEISQLSKLMILNVCKNKLDSLPASIGQLSQLVSLNLNNNSQLVSLRPTMGLLSNLVELKLDGTRLKTPPPEIVSLGLKSILLYLKDLIKGQE 1718          
BLAST of CX300270 vs. ExPASy Swiss-Prot
Match: SHOC2_MOUSE (Leucine-rich repeat protein SHOC-2 OS=Mus musculus GN=Shoc2 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.311e-13
Identity = 50/149 (33.56%), Postives = 72/149 (48.32%), Query Frame = 3
Query:    3 LECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFAD---------------------LRALPRSIGNLEMLEQLDISDD-QIRILPDSFRLLSKLRVFRTDETPLEVPPRQVAKLGAQAVVQFM 383
            L  LE+L L  N +K LP  +GNL KL+ELD+  N+LES+   + +   L+KL + NN                        L  LP  IG LE LE+L ++D+  +  LP    L SKL +   +  PL   P Q+   G   ++QF+
Sbjct:  424 LVSLEVLILSNNLLKKLPHGLGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLSTLPRGIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELALCSKLSIMSIENCPLSHLPPQIVAGGPSFIIQFL 572          
The following BLAST results are available for this feature:
BLAST of CX300270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
LRCH4_HUMAN3.225e-1537.90Leucine-rich repeat and calponin homology domain-c... [more]
LRCH4_MOUSE2.730e-1436.09Leucine-rich repeat and calponin homology domain-c... [more]
MFHA1_XENTR4.657e-1438.21Malignant fibrous histiocytoma-amplified sequence ... [more]
LRCH2_MOUSE4.657e-1432.14Leucine-rich repeat and calponin homology domain-c... [more]
SHOC2_DANRE6.083e-1434.90Leucine-rich repeat protein SHOC-2 OS=Danio rerio ... [more]
LRSM1_HUMAN7.944e-1433.07E3 ubiquitin-protein ligase LRSAM1 OS=Homo sapiens... [more]
Y0138_DICDI1.038e-1341.67Probable serine/threonine-protein kinase DDB_G0278... [more]
LRCH2_HUMAN1.355e-1330.71Leucine-rich repeat and calponin homology domain-c... [more]
PATS1_DICDI1.770e-1329.94Probable serine/threonine-protein kinase pats1 OS=... [more]
SHOC2_MOUSE2.311e-1333.56Leucine-rich repeat protein SHOC-2 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionC07008B09SK NTLeaf1 Citrus clementina cDNA clone C07008B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300270 ID=CX300270; Name=CX300270; organism=Citrus clementina; type=EST; length=439bp
AGCTCGAGTGCTTGGAGATTCTTACTTTGCATTATAATAGAATAAAAGGG
TTACCGACAACTATAGGTAACCTTACCAAGTTAAAGGAGCTTGATGTAAG
CTTCAATGAGCTTGAGTCAATCACCGAGAACCTGTGCTTTGCGGTAAGTC
TCAAGAAATTGAATGTAGGGAACAACTTTGCTGATCTTAGAGCCTTGCCA
AGGTCAATTGGAAATCTTGAGATGCTGGAACAGTTGGACATAAGTGATGA
TCAAATAAGGATTTTACCAGATTCTTTCAGGTTGTTGTCAAAATTGAGAG
TTTTTCGCACCGATGAGACTCCTTTAGAAGTTCCACCAAGGCAAGTTGCT
AAATTGGGTGCTCAGGCTGTTGTCCAGTTCATGGTAGATCTTGTTGCTAA
TAGGGATGCTAAATCTCAACCAGTAGACGAGGAGAAGAA
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