CX300271

Overview
NameCX300271
Unique NameCX300271
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length446
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300271_ssr217 microsatellite CX300271_ssr217:217..238. BLAST: Citrus ESTs to Prunus persica proteins V1
CX300271_ssr188 microsatellite CX300271_ssr188:188..199. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX300271 vs. ExPASy Swiss-Prot
Match: GDL79_ARATH (GDSL esterase/lipase At5g33370 OS=Arabidopsis thaliana GN=At5g33370 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.456e-21
Identity = 42/62 (67.74%), Postives = 53/62 (85.48%), Query Frame = 1
Query:    1 NGLGLCTPASNLCPNRNVYAFWDPFHPSERANGFIVQEFMTGSTEYMYPMNLSTIMALDSRT 186
            NG+GLCTP SNLCPNR+++AFWDPFHPSE+A+  I Q+ + GS EYM+PMNLSTI+ +DS T
Sbjct:  305 NGIGLCTPLSNLCPNRDLFAFWDPFHPSEKASRIIAQQILNGSPEYMHPMNLSTILTVDSMT 366          
BLAST of CX300271 vs. ExPASy Swiss-Prot
Match: GDL67_ARATH (GDSL esterase/lipase At4g28780 OS=Arabidopsis thaliana GN=At4g28780 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.483e-21
Identity = 45/61 (73.77%), Postives = 50/61 (81.97%), Query Frame = 1
Query:    1 NGLGLCTPASNLCPNRNVYAFWDPFHPSERANGFIVQEFMTGSTEYMYPMNLSTIMALDSR 183
            NG G+CTP S LC +RN YAFWDPFHP+E+A   IVQ+ MTGS EYM PMNLSTIMALDSR
Sbjct:  306 NGQGVCTPLSTLCSDRNAYAFWDPFHPTEKATRLIVQQIMTGSVEYMNPMNLSTIMALDSR 366          
BLAST of CX300271 vs. ExPASy Swiss-Prot
Match: LTL1_ARATH (GDSL esterase/lipase LTL1 OS=Arabidopsis thaliana GN=LTL1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.243e-21
Identity = 42/60 (70.00%), Postives = 52/60 (86.67%), Query Frame = 1
Query:    1 NGLGLCTPASNLCPNRNVYAFWDPFHPSERANGFIVQEFMTGSTEYMYPMNLSTIMALDS 180
            NG+GLCTP SNLCPNR++YAFWD FHP+E+AN  IV + +TGS++YM+PMNLST M LDS
Sbjct:  304 NGIGLCTPVSNLCPNRDLYAFWDAFHPTEKANRIIVNQILTGSSKYMHPMNLSTAMLLDS 363          
BLAST of CX300271 vs. ExPASy Swiss-Prot
Match: GDL77_ARATH (GDSL esterase/lipase At5g18430 OS=Arabidopsis thaliana GN=At5g18430 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.275e-17
Identity = 37/58 (63.79%), Postives = 47/58 (81.03%), Query Frame = 1
Query:    1 NGLGLCTPASNLCPNRNVYAFWDPFHPSERANGFIVQEFMTGSTEYMYPMNLSTIMAL 174
            NG+GLCT  SNLCPNR +Y FWD FHP+E+AN  IV+  +TG+T+YM PMNLS+ +AL
Sbjct:  305 NGMGLCTVLSNLCPNRELYVFWDAFHPTEKANRMIVRHILTGTTKYMNPMNLSSALAL 362          
The following BLAST results are available for this feature:
BLAST of CX300271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GDL79_ARATH1.456e-2167.74GDSL esterase/lipase At5g33370 OS=Arabidopsis thal... [more]
GDL67_ARATH2.483e-2173.77GDSL esterase/lipase At4g28780 OS=Arabidopsis thal... [more]
LTL1_ARATH3.243e-2170.00GDSL esterase/lipase LTL1 OS=Arabidopsis thaliana ... [more]
GDL77_ARATH1.275e-1763.79GDSL esterase/lipase At5g18430 OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionC07008B10SK NTLeaf1 Citrus clementina cDNA clone C07008B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300271 ID=CX300271; Name=CX300271; organism=Citrus clementina; type=EST; length=446bp
AATGGCCTAGGATTGTGCACTCCGGCATCCAACTTATGCCCAAATAGAAA
TGTGTATGCATTTTGGGATCCATTTCATCCATCTGAAAGAGCAAATGGAT
TTATTGTTCAAGAATTCATGACTGGTTCGACTGAGTACATGTATCCCATG
AATCTCAGCACCATCATGGCCTTGGATTCAAGGACATAATCAATCAATCA
CCTTTGTTACATATACATATATATATATATATATATATACACACATACAC
ACACAGAGCTAATATATATCGGCCTGTTTCAAGGCAATTAGGGCCATTAA
TGCTGCGTGTGTCTGTGTTGAGAATAATATGTATCTTCAAACCCGTACTA
CTGTTTGTTGCCTTTTGTGATTTTTCGTTGCTGTAGTAACTTATGATATT
GGCCAATTGTATGCGTAATGTTCAATGAAAAAAAAAAAAAAAAAAA
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