CX300304

Overview
NameCX300304
Unique NameCX300304
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length259
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3380 contig Ccv1_Contig3380:316..574. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300304 vs. ExPASy Swiss-Prot
Match: PSBW_SPIOL (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.089e-12
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 2 
Query:    2 EGTGLPFGLSNNTLGWILFGVFGLIWALYFIY 97
            EGTGLPFGLSNN LGWILFGVFGLIWALYF+Y
Sbjct:   92 EGTGLPFGLSNNLLGWILFGVFGLIWALYFVY 123
[Close]
BLAST of CX300304 vs. ExPASy Swiss-Prot
Match: PSBW_ARATH (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.003e-11
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 2 
Query:    2 EGTGLPFGLSNNTLGWILFGVFGLIWALYFIYT 100
            EGTGLPFGLSNN LGWILFGVFGLIW  +F+YT
Sbjct:   88 EGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYT 120
The following BLAST results are available for this feature:
BLAST of CX300304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PSBW_SPIOL3.089e-1293.75Photosystem II reaction center W protein, chloropl... [more]
PSBW_ARATH2.003e-1184.85Photosystem II reaction center W protein, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionC07008E09SK NTLeaf1 Citrus clementina cDNA clone C07008E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300304 ID=CX300304; Name=CX300304; organism=Citrus clementina; type=EST; length=259bp
AGAAGGAACAGGGCTTCCATTTGGACTAAGCAACAACACTCTTGGGTGGA
TTCTCTTTGGTGTGTTTGGATTGATTTGGGCTCTCTATTTTATTTACACT
GGCGATCTTGAAGAAGATGAAGAGTCTGGCTTGTCCCTTTGAATTAAGGG
TTATTTAAACTTAGCTTGTTGAATTAATTAATGCCCTCTTGGTAAAGAAC
TGGAAACCTTTAAATCAACCAAAGAAAAGCTTTTGGCTCTTGAAAAAAAA
AAAAAAAAA
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