CX300311

Overview
NameCX300311
Unique NameCX300311
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length274
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9492 contig Ccv1_Contig9492:720..993. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300311 vs. ExPASy Swiss-Prot
Match: PER42_ARATH (Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 8.755e-44
Identity = 81/91 (89.01%), Postives = 86/91 (94.51%), Query Frame = 2 
Query:    2 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDSKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITILSENN 274
            NPDHVPHMLHKCPD+IPDPKAVQYVRNDRGTPMVLDNNYYRNILD+KGL++VDHQLA DKRTRP VKKMAK Q YFFKEF+RAI ILSENN
Sbjct:  220 NPDHVPHMLHKCPDSIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLLLVDHQLAHDKRTRPIVKKMAKDQAYFFKEFTRAIQILSENN 310
[Close]
BLAST of CX300311 vs. ExPASy Swiss-Prot
Match: PER21_ARATH (Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.242e-23
Identity = 47/91 (51.65%), Postives = 65/91 (71.43%), Query Frame = 2 
Query:    2 NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDSKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITILSENN 274
            +P +  ++  +CP   PDP AV Y RNDR TPMV+DN YY+NI+  KGL+++D +LATD RT P+V KMA   +YF ++FSR + +LSE N
Sbjct:  220 DPSYALYLKKRCPSPTPDPNAVLYSRNDRETPMVVDNMYYKNIMAHKGLLVIDDELATDPRTAPFVAKMAADNNYFHEQFSRGVRLLSETN 310
The following BLAST results are available for this feature:
BLAST of CX300311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PER42_ARATH8.755e-4489.01Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=... [more]
PER21_ARATH2.242e-2351.65Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=... [more]
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Properties
Property NameValue
Genbank descriptionC07008F04SK NTLeaf1 Citrus clementina cDNA clone C07008F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300311 ID=CX300311; Name=CX300311; organism=Citrus clementina; type=EST; length=274bp
GAACCCTGACCACGTTCCGCATATGCTCCATAAGTGTCCTGATGCAATCC
CAGACCCCAAGGCTGTTCAGTATGTGAGGAATGACCGTGGCACACCCATG
GTGCTGGACAACAACTACTATAGGAACATATTGGACAGCAAGGGCTTGAT
GATGGTTGATCATCAGCTAGCCACCGACAAGAGGACAAGACCTTATGTTA
AGAAGATGGCCAAGAGTCAAGACTACTTCTTCAAGGAATTTTCAAGAGCC
ATTACTATTCTTTCTGAGAACAAC
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