CX300356

Overview
NameCX300356
Unique NameCX300356
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300356 vs. ExPASy Swiss-Prot
Match: YK4P_CAEEL (UPF0160 protein C27H6.8 OS=Caenorhabditis elegans GN=C27H6.8 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 4.549e-13
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 1
Query:   25 FESRKPLPAQWQGLRDDELSKEAGIPGCVFVHMSGFIGGNKSYGG 159
            FE+R PLPA W+GLRDD+LSKE+GIPG VFVH+SGFIGGN +  G
Sbjct:  272 FENRMPLPAAWRGLRDDDLSKESGIPGGVFVHISGFIGGNLTREG 316          
BLAST of CX300356 vs. ExPASy Swiss-Prot
Match: YIW4_SCHPO (UPF0160 protein C694.04c OS=Schizosaccharomyces pombe GN=SPAC694.04c PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.549e-13
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 1
Query:    1 AVAVSPDRFESRKPLPAQWQGLRDDELSKEAGIPGCVFVHMSGFIGGNKSYGG 159
            AV++ P  F  R PLP  W+G+RD++LS+  GIPGC+FVH SGFIGGN+++ G
Sbjct:  258 AVSIDPTSFTCRLPLPEPWRGIRDEKLSELTGIPGCIFVHASGFIGGNQTFEG 310          
BLAST of CX300356 vs. ExPASy Swiss-Prot
Match: MYG1_RAT (UPF0160 protein MYG1, mitochondrial OS=Rattus norvegicus GN=Myg1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.258e-11
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 1
Query:    4 VAVSPDRFESRKPLPAQWQGLRDDELSKEAGIPGCVFVHMSGFIGGNKSYGG 159
            V   P  F+SR PLP  W+GLRD+ L + +GIPGC+FVH SGFIGG+ +  G
Sbjct:  306 VPKEPHSFQSRLPLPEPWRGLRDEALDQVSGIPGCIFVHASGFIGGHHTREG 357          
BLAST of CX300356 vs. ExPASy Swiss-Prot
Match: MYG1_HUMAN (UPF0160 protein MYG1, mitochondrial OS=Homo sapiens GN=C12orf10 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.258e-11
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 1
Query:    4 VAVSPDRFESRKPLPAQWQGLRDDELSKEAGIPGCVFVHMSGFIGGNKSYGG 159
            V   P  F+SR PLP  W+GLRD+ L + +GIPGC+FVH SGFIGG+ +  G
Sbjct:  306 VPKEPHSFQSRLPLPEPWRGLRDEALDQVSGIPGCIFVHASGFIGGHPTREG 357          
BLAST of CX300356 vs. ExPASy Swiss-Prot
Match: MYG1_MOUSE (UPF0160 protein MYG1, mitochondrial OS=Mus musculus GN=Myg1 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.486e-11
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 1
Query:    4 VAVSPDRFESRKPLPAQWQGLRDDELSKEAGIPGCVFVHMSGFIGGNKSYGG 159
            V   P  F+SR PLP  W+GLRD  L + +GIPGC+FVH SGFIGG+ +  G
Sbjct:  305 VPKEPHSFQSRLPLPEPWRGLRDKALDQVSGIPGCIFVHASGFIGGHHTREG 356          
The following BLAST results are available for this feature:
BLAST of CX300356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
YK4P_CAEEL4.549e-1373.33UPF0160 protein C27H6.8 OS=Caenorhabditis elegans ... [more]
YIW4_SCHPO4.549e-1356.60UPF0160 protein C694.04c OS=Schizosaccharomyces po... [more]
MYG1_RAT4.258e-1155.77UPF0160 protein MYG1, mitochondrial OS=Rattus norv... [more]
MYG1_HUMAN4.258e-1155.77UPF0160 protein MYG1, mitochondrial OS=Homo sapien... [more]
MYG1_MOUSE9.486e-1155.77UPF0160 protein MYG1, mitochondrial OS=Mus musculu... [more]
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Properties
Property NameValue
Genbank descriptionC07009B10SK SaltLeaf1 Citrus clementina cDNA clone C07009B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300356 ID=CX300356; Name=CX300356; organism=Citrus clementina; type=EST; length=453bp
GCTGTGGCAGTGTCCCCCGATAGATTCGAGAGCCGGAAGCCTCTTCCAGC
TCAGTGGCAAGGTCTGAGAGATGATGAACTCTCAAAGGAGGCGGGGATAC
CAGGTTGTGTCTTTGTCCATATGAGTGGTTTCATTGGTGGAAATAAAAGT
TATGGAGGTGCATTGGCCATGGCTCGCGCTGCTTTGAAGCTCTAAACAGC
ACAAAAAAGGAAAAAAATTGCATTACCGGATTTATTAACTATTCACAGTT
TCTATTCAAAGATCTTTCAAGTTGTTGCTGCAATTTTGGCGTTTTTCTCA
AAATATCATATTCGTAACAAGTATTCATTCAGTCACCTGAATTTATTGTC
TAAAACAGCACTCTAATGTGATAGTTTTGTCTGAACACATTCATACATTT
GATCGAACTAAATGTTTGCTAGTTCCTGGAAAAAAAAAAAAAAAAAAAAA
AAA
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