CX300414

Overview
NameCX300414
Unique NameCX300414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length421
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RK18_ARATH (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.443e-38
Identity = 86/135 (63.70%), Postives = 102/135 (75.56%), Query Frame = 2
Query:   20 AGASSVWML-NQSSFLGSCQQLSSVSKLVXXXXXXXXXXXLFIVEASTRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSC 421
            +G  SV ++ N+S+FLG+  Q  +V   +             +VEA T+  T  EDR ARHSRIRKK++GT ERPRLCVFRSNKHLYVQVIDDTKMHTLASAST QKPIS+E DY+SGPTIEV+KKVGE+IAKSC
Sbjct:    5 SGCGSVSLITNRSAFLGNGLQHRAV--FLKPWSSSSLQSRSMVVEAKTK--TSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSC 135          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RK18_ORYSJ (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL18 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.032e-29
Identity = 60/93 (64.52%), Postives = 74/93 (79.57%), Query Frame = 2
Query:  143 IVEASTRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSC 421
            +V A  +  T + DR ARH R+RKK+ GT ERPRL VFRSNKHLY QVIDDTK  TL SASTM K +S +L+YS+GPT+EV++K+GE+IAKSC
Sbjct:   43 VVVAKVKVSTPQADRIARHVRLRKKVSGTTERPRLSVFRSNKHLYAQVIDDTKSCTLVSASTMHKSLSKDLEYSAGPTVEVAQKIGEVIAKSC 135          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_CYAP7 (50S ribosomal protein L18 OS=Cyanothece sp. (strain PCC 7424) GN=rplR PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.919e-20
Identity = 46/83 (55.42%), Postives = 60/83 (72.29%), Query Frame = 2
Query:  167 RTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            RT+ E    RHSRIR+K++GTP RPRL VFRSN H+Y QVIDD   HTL +AST+ K +  E  +SSG T E S+ VG+++A+
Sbjct:    3 RTRTESVQRRHSRIRRKVEGTPSRPRLAVFRSNNHIYAQVIDDVAQHTLVAASTLDKDLKGE--FSSGATCEASEAVGKLVAQ 83          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_THESQ (50S ribosomal protein L18 OS=Thermotoga sp. (strain RQ2) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.945e-19
Identity = 45/85 (52.94%), Postives = 61/85 (71.76%), Query Frame = 2
Query:  161 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            +  +K+E R  RH R+RKK+ GTPERPRLCVFRSNKH+Y Q+IDDT  HTL SAST+   + ++L  +    +E +K+VG +I K
Sbjct:    3 KKESKKEQRLRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTW--NVEAAKEVGLLIGK 85          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_THEP1 (50S ribosomal protein L18 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplR PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.945e-19
Identity = 45/85 (52.94%), Postives = 61/85 (71.76%), Query Frame = 2
Query:  161 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            +  +K+E R  RH R+RKK+ GTPERPRLCVFRSNKH+Y Q+IDDT  HTL SAST+   + ++L  +    +E +K+VG +I K
Sbjct:    3 KKESKKEQRLRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTW--NVEAAKEVGLLIGK 85          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_THEMA (50S ribosomal protein L18 OS=Thermotoga maritima GN=rplR PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.945e-19
Identity = 45/85 (52.94%), Postives = 61/85 (71.76%), Query Frame = 2
Query:  161 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            +  +K+E R  RH R+RKK+ GTPERPRLCVFRSNKH+Y Q+IDDT  HTL SAST+   + ++L  +    +E +K+VG +I K
Sbjct:    3 KKESKKEQRLRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTW--NVEAAKEVGLLIGK 85          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_ANAVT (50S ribosomal protein L18 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplR PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.391e-19
Identity = 43/81 (53.09%), Postives = 59/81 (72.84%), Query Frame = 2
Query:  170 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIA 412
            T+RE +  RH R+R K+ G+PERPRL VFRSN+H+Y QVIDDT+ HTL SAST++  +   L  +SG   E S ++G++IA
Sbjct:    4 TRRESKQRRHRRVRGKVQGSPERPRLAVFRSNEHIYAQVIDDTQHHTLVSASTVEPEVKSSL--ASGANCEASSQIGKLIA 82          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_THENN (50S ribosomal protein L18 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplR PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.652e-19
Identity = 45/85 (52.94%), Postives = 60/85 (70.59%), Query Frame = 2
Query:  161 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            +  ++ E R  RH R+RKK+ GTPERPRLCVFRSNKH+Y Q+IDDT  HTL SAST+   + ++L  +    IE +K+VG +I K
Sbjct:    3 KKESRNERRIRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTW--NIEAAKEVGLLIGK 85          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_ANASP (50S ribosomal protein L18 OS=Anabaena sp. (strain PCC 7120) GN=rplR PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.652e-19
Identity = 43/81 (53.09%), Postives = 60/81 (74.07%), Query Frame = 2
Query:  170 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIA 412
            T+RE +  RH R+R K+ G+PERPRL VFRSN+H+Y QVIDDT+ HTLA+AST++  +   L  +SG   E S ++G++IA
Sbjct:    4 TRRESKERRHRRVRGKVQGSPERPRLAVFRSNEHIYAQVIDDTQHHTLAAASTVEPELKSSL--ASGSNCEASAQIGKLIA 82          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_GEOKA (50S ribosomal protein L18 OS=Geobacillus kaustophilus GN=rplR PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.150e-18
Identity = 47/77 (61.04%), Postives = 55/77 (71.43%), Query Frame = 2
Query:  185 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            R  RH+RIRKKI GT ERPRL VFRSNKH+Y Q+IDDTK  T+ SAST+ K    E    S   IE +KKVGE++AK
Sbjct:   11 RKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDTKSSTIVSASTLDK----EFGLDSTNNIEAAKKVGELVAK 83          
The following BLAST results are available for this feature:
BLAST of CX300414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
RK18_ARATH2.443e-3863.7050S ribosomal protein L18, chloroplastic OS=Arabid... [more]
RK18_ORYSJ6.032e-2964.5250S ribosomal protein L18, chloroplastic OS=Oryza ... [more]
RL18_CYAP73.919e-2055.4250S ribosomal protein L18 OS=Cyanothece sp. (strai... [more]
RL18_THESQ1.945e-1952.9450S ribosomal protein L18 OS=Thermotoga sp. (strai... [more]
RL18_THEP11.945e-1952.9450S ribosomal protein L18 OS=Thermotoga petrophila... [more]
RL18_THEMA1.945e-1952.9450S ribosomal protein L18 OS=Thermotoga maritima G... [more]
RL18_ANAVT7.391e-1953.0950S ribosomal protein L18 OS=Anabaena variabilis (... [more]
RL18_THENN9.652e-1952.9450S ribosomal protein L18 OS=Thermotoga neapolitan... [more]
RL18_ANASP9.652e-1953.0950S ribosomal protein L18 OS=Anabaena sp. (strain ... [more]
RL18_GEOKA2.150e-1861.0450S ribosomal protein L18 OS=Geobacillus kaustophi... [more]

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Properties
Property NameValue
Genbank descriptionC07010A03SK SaltLeaf1 Citrus clementina cDNA clone C07010A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300414 ID=CX300414; Name=CX300414; organism=Citrus clementina; type=EST; length=421bp
AGGGAGGAAGGGAATGGCAGCCGGTGCGAGCTCAGTTTGGATGCTTAATC
AGAGTTCATTTCTAGGATCATGTCAGCAACTTTCGAGTGTTTCAAAATTA
GTGGCAAGCAGAAGGCCAAGGCCAGCACCGCCATCTCTTTTCATCGTCGA
AGCCTCGACCAGACCAAGAACCAAAAGAGAGGACCGCACTGCCCGCCATT
CTCGCATCAGAAAGAAGATTGATGGGACTCCTGAGAGGCCGAGGCTGTGT
GTTTTCCGCTCCAACAAGCATCTCTATGTCCAGGTGATTGATGATACTAA
GATGCACACACTTGCTTCAGCTTCGACGATGCAGAAGCCCATCTCTGACG
AGCTTGACTATAGTTCTGGTCCGACGATTGAAGTTTCAAAGAAGGTGGGT
GAAATGATTGCAAAGTCATGT
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