CX300437 | Citrus Genome Database

Overview


Name	CX300437
Unique Name	CX300437
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	383

Libraries


Library Name	Type
SaltLeaf1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig14246	contig	Ccv1_Contig14246:805..1187.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

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BLAST of CX300437 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 4.074e-65
Identity = 122/127 (96.06%), Postives = 125/127 (98.43%), Query Frame = 2

Query:    2 TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRK 382
            TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHA+GIAKHGEIDYEA+VKL EGFNGADLRN+CTEAGM AIRAERDYVIHEDFMKAVRK
Sbjct:  253 TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYEAIVKLGEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKAVRK 379

[Close]

BLAST of CX300437 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 5.321e-65
Identity = 122/127 (96.06%), Postives = 125/127 (98.43%), Query Frame = 2

Query:    2 TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRK 382
            TSADREIQRTLMELLNQLDGFD LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRM+ILKIHAAGIAKHGEIDYEA+VKLAEGFNGADLRN+CTEAGM AIRAERDYVIHEDFMKAVRK
Sbjct:  253 TSADREIQRTLMELLNQLDGFDNLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYEAIVKLAEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKAVRK 379

[Close]

BLAST of CX300437 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 1.833e-57
Identity = 107/127 (84.25%), Postives = 117/127 (92.13%), Query Frame = 2

Query:    2 TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRK 382
            TSADREIQRTLMELLNQ+DGFD L KVK+IMATNRPDVLDPALLRPGRLDRKIEIPLPNE  R+++LKIHAA I KHG++DYEA+ KLA+GFN ADLRNVCTEAGM AIRAERDYV+ EDFMKAVRK
Sbjct:  251 TSADREIQRTLMELLNQMDGFDTLSKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYEAIAKLADGFNAADLRNVCTEAGMFAIRAERDYVMEEDFMKAVRK 377

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BLAST of CX300437 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 2.027e-56
Identity = 109/127 (85.83%), Postives = 118/127 (92.91%), Query Frame = 2

Query:    2 TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRK 382
            TSADREIQRTLMELLNQLDGFD LGKVK+IMATNRPD LDPALLRPGRLDRKIEI LPNEQSR+EILKIH+  I KHGEID+EAVVKL++GF+ ADLRNVCTEAGM AIRAER++VI EDFMKAVRK
Sbjct:  264 TSADREIQRTLMELLNQLDGFDSLGKVKVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRK 390

[Close]

BLAST of CX300437 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 7.701e-56
Identity = 105/127 (82.68%), Postives = 116/127 (91.34%), Query Frame = 2

Query:    2 TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRK 382
            TSADREIQRTLMELLNQ+DGFD L +VKMIMATNRPD LDPALLRPGRLDRKI I LPNEQ+R++ILKIHA  I KHGEIDYEA+VKL++GFNGADLRNVCTEAGM AIRA+ D+V+ EDFMKAVRK
Sbjct:  247 TSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRK 373

[Close]

BLAST of CX300437 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 7.701e-56
Identity = 105/127 (82.68%), Postives = 116/127 (91.34%), Query Frame = 2

Query:    2 TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRK 382
            TSADREIQRTLMELLNQ+DGFD L +VKMIMATNRPD LDPALLRPGRLDRKI I LPNEQ+R++ILKIHA  I KHGEIDYEA+VKL++GFNGADLRNVCTEAGM AIRA+ D+V+ EDFMKAVRK
Sbjct:  247 TSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRK 373

[Close]

BLAST of CX300437 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 7.701e-56
Identity = 105/127 (82.68%), Postives = 116/127 (91.34%), Query Frame = 2

Query:    2 TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRK 382
            TSADREIQRTLMELLNQ+DGFD L +VKMIMATNRPD LDPALLRPGRLDRKI I LPNEQ+R++ILKIHA  I KHGEIDYEA+VKL++GFNGADLRNVCTEAGM AIRA+ D+V+ EDFMKAVRK
Sbjct:  247 TSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRK 373

[Close]

BLAST of CX300437 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 4.992e-55
Identity = 104/127 (81.89%), Postives = 115/127 (90.55%), Query Frame = 2

Query:    2 TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRK 382
            TSADREIQRTLMELLNQ+DGFD L +VKMIMATNRPD LDPALLRPGRLDRKI I LPNEQ+R++ILKIHA  I KHGEIDYEA+VKL++GFNGADL NVCTEAGM AIRA+ D+V+ EDFMKAVRK
Sbjct:  247 TSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLGNVCTEAGMFAIRADHDFVVQEDFMKAVRK 373

[Close]

BLAST of CX300437 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 2.834e-50
Identity = 98/127 (77.17%), Postives = 107/127 (84.25%), Query Frame = 2

Query:    2 TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRK 382
            TSADREIQRTLMELLNQ+DGFD LG+ K+IMATNRPD LDPALLRPGRLDRKIEIPLPNE  RMEILKIH   ++K GEIDYEA+VKL +G NGADLRNV TEAG  AI+ +RDYVI  D M A RK
Sbjct:  246 TSADREIQRTLMELLNQMDGFDYLGQTKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARK 372

[Close]

BLAST of CX300437 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4)

HSP 1 Score: 189.119 bits (479), Expect = 5.910e-48
Identity = 91/127 (71.65%), Postives = 106/127 (83.46%), Query Frame = 2

Query:    2 TSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRK 382
            TSADREIQRTLMELL Q+DGFD LG+ K+IMATNRPD LDPALLRPGRLDRK+EIPLPNE  R+EI KIH A + K GE D+EA VK+++GFNGAD+RN  TEAG  AIR +RD++  +D MKAVRK
Sbjct:  295 TSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421

The following BLAST results are available for this feature:

BLAST of CX300437 vs. ExPASy Swiss-Prot

BLAST of CX300437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 289


Match Name	E-value	Identity	Description
PS10B_ARATH	4.074e-65	96.06	26S protease regulatory subunit S10B homolog B OS=...	[more]
PS10A_ARATH	5.321e-65	96.06	26S protease regulatory subunit 10B homolog A OS=A...	[more]
PRS10_DICDI	1.833e-57	84.25	26S protease regulatory subunit S10B OS=Dictyostel...	[more]
PRS10_CAEEL	2.027e-56	85.83	Probable 26S protease regulatory subunit S10B OS=C...	[more]
PRS10_SPETR	7.701e-56	82.68	26S protease regulatory subunit S10B OS=Spermophil...	[more]
PRS10_MOUSE	7.701e-56	82.68	26S protease regulatory subunit S10B OS=Mus muscul...	[more]
PRS10_HUMAN	7.701e-56	82.68	26S protease regulatory subunit S10B OS=Homo sapie...	[more]
PRS10_BOVIN	4.992e-55	81.89	26S protease regulatory subunit S10B OS=Bos taurus...	[more]
PRS10_SCHPO	2.834e-50	77.17	Probable 26S protease subunit rpt4 OS=Schizosaccha...	[more]
PRS10_YEAST	5.910e-48	71.65	26S protease subunit RPT4 OS=Saccharomyces cerevis...	[more]

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Properties


Property Name	Value
Genbank description	C07010C03SK SaltLeaf1 Citrus clementina cDNA clone C07010C03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX300437 ID=CX300437; Name=CX300437; organism=Citrus clementina; type=EST; length=383bp
AACCAGTGCAGATCGTGAAATTCAAAGGACACTGATGGAGTTACTTAATC
AGCTTGATGGATTTGATCAGCTTGGGAAGGTTAAAATGATAATGGCCACT
AACAGACCTGATGTCCTTGACCCTGCACTTCTTCGTCCAGGGCGACTGGA
TAGGAAAATTGAGATTCCATTGCCAAATGAGCAGTCAAGAATGGAAATTC
TTAAAATTCATGCTGCTGGCATTGCTAAGCATGGTGAGATTGATTATGAG
GCTGTTGTGAAGCTTGCAGAGGGCTTTAATGGGGCTGATCTCCGAAATGT
TTGCACCGAGGCTGGAATGTCGGCAATCCGTGCTGAACGTGATTATGTCA
TCCACGAAGATTTTATGAAGGCTGTCCGGAAAC