CX300447

Overview
NameCX300447
Unique NameCX300447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length380
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13369 contig Ccv1_Contig13369:287..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300447 vs. ExPASy Swiss-Prot
Match: FBRL1_ARATH (rRNA 2'-O-methyltransferase fibrillarin 1 OS=Arabidopsis thaliana GN=FIB1 PE=1 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 1.007e-63
Identity = 117/126 (92.86%), Postives = 121/126 (96.03%), Query Frame = 2
Query:    2 PHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPII 379
            PHRH GVFIAKGKEDALVTKNLV GEAVYNEKRISVQNEDGTKVEYR+WNPFRSKLAAA+LGGVDNIWIKPG +VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSGRDLVNMAKKRTNVIPII
Sbjct:   73 PHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGRDLVNMAKKRTNVIPII 198          
BLAST of CX300447 vs. ExPASy Swiss-Prot
Match: FBRL2_ARATH (rRNA 2'-O-methyltransferase fibrillarin 2 OS=Arabidopsis thaliana GN=FIB2 PE=1 SV=2)

HSP 1 Score: 239.965 bits (611), Expect = 2.931e-63
Identity = 116/126 (92.06%), Postives = 120/126 (95.24%), Query Frame = 2
Query:    2 PHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPII 379
            PHRH GVFIAKGKEDALVTKNLV GEAVYNEKRISVQNEDGTK EYR+WNPFRSKLAAA+LGGVDNIWIKPG +VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRSGRDLVNMAKKRTNVIPII
Sbjct:   84 PHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKTEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRSGRDLVNMAKKRTNVIPII 209          
BLAST of CX300447 vs. ExPASy Swiss-Prot
Match: FBRL_SCHPO (rRNA 2'-O-methyltransferase fibrillarin OS=Schizosaccharomyces pombe GN=fib1 PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 1.840e-57
Identity = 103/126 (81.75%), Postives = 118/126 (93.65%), Query Frame = 2
Query:    2 PHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPII 379
            PHRH GVFIA+GKED LVT+NLV GE+VYNEKRISV + DGTKVEYR+WNPFRSKLAA +LGG+DNI+IKPG RVLYLGAA+GT+VSHV+D+VGP G+VYAVEFSHRSGRDL+NMAKKRTNVIPI+
Sbjct:   77 PHRHAGVFIARGKEDLLVTRNLVPGESVYNEKRISVDSPDGTKVEYRVWNPFRSKLAAGILGGLDNIYIKPGARVLYLGAANGTSVSHVADVVGPEGLVYAVEFSHRSGRDLLNMAKKRTNVIPIV 202          
BLAST of CX300447 vs. ExPASy Swiss-Prot
Match: FBRL_RAT (rRNA 2'-O-methyltransferase fibrillarin OS=Rattus norvegicus GN=Fbl PE=1 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 1.458e-54
Identity = 101/126 (80.16%), Postives = 114/126 (90.48%), Query Frame = 2
Query:    2 PHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPII 379
            PHRHEGVFI +GKEDALVTKNLV GE+VY EKR+S+   D  K+EYR WNPFRSKLAAA+LGGVD I IKPG +VLYLGAASGTTVSHVSDIVGP+G+VYAVEFSHRSGRDL+N+AKKRTN+IP+I
Sbjct:   96 PHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGDD-KIEYRAWNPFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVI 220          
BLAST of CX300447 vs. ExPASy Swiss-Prot
Match: FBRL_MOUSE (rRNA 2'-O-methyltransferase fibrillarin OS=Mus musculus GN=Fbl PE=1 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 1.458e-54
Identity = 101/126 (80.16%), Postives = 114/126 (90.48%), Query Frame = 2
Query:    2 PHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPII 379
            PHRHEGVFI +GKEDALVTKNLV GE+VY EKR+S+   D  K+EYR WNPFRSKLAAA+LGGVD I IKPG +VLYLGAASGTTVSHVSDIVGP+G+VYAVEFSHRSGRDL+N+AKKRTN+IP+I
Sbjct:   96 PHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGDD-KIEYRAWNPFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVI 220          
BLAST of CX300447 vs. ExPASy Swiss-Prot
Match: FBRL_HUMAN (rRNA 2'-O-methyltransferase fibrillarin OS=Homo sapiens GN=FBL PE=1 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 1.458e-54
Identity = 101/126 (80.16%), Postives = 114/126 (90.48%), Query Frame = 2
Query:    2 PHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPII 379
            PHRHEGVFI +GKEDALVTKNLV GE+VY EKR+S+   D  K+EYR WNPFRSKLAAA+LGGVD I IKPG +VLYLGAASGTTVSHVSDIVGP+G+VYAVEFSHRSGRDL+N+AKKRTN+IP+I
Sbjct:   90 PHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGDD-KIEYRAWNPFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVI 214          
BLAST of CX300447 vs. ExPASy Swiss-Prot
Match: FBRL_XENLA (rRNA 2'-O-methyltransferase fibrillarin OS=Xenopus laevis GN=fbl PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 2.487e-54
Identity = 103/127 (81.10%), Postives = 115/127 (90.55%), Query Frame = 2
Query:    2 PHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDG-TKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPII 379
            PHRHEG+FI +GKEDALVTKNLV GE+VY EKRISV  EDG  K EYR WNPFRSK+AAA+LGGVD I IKPGV+VLYLGAASGTTVSHVSD+VGP G+VYAVEFSHRSGRDL+N+AKKRTN+IP+I
Sbjct:   92 PHRHEGIFICRGKEDALVTKNLVPGESVYGEKRISV--EDGEVKTEYRAWNPFRSKIAAAILGGVDQIHIKPGVKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVAKKRTNIIPVI 216          
BLAST of CX300447 vs. ExPASy Swiss-Prot
Match: FBRL_DROER (rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila erecta GN=Fib PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 1.612e-53
Identity = 100/126 (79.37%), Postives = 114/126 (90.48%), Query Frame = 2
Query:    2 PHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPII 379
            PHRHEGVFIA+GKEDALVT+N V G  VY EKRISV+N +G K+EYR+WNPFRSKLAAAVLGGV+ I + PG +VLYLGAASGTTVSHVSD+VGP G+VYAVEFSHRSGRDL+N+AKKRTN+IPII
Sbjct:  116 PHRHEGVFIARGKEDALVTRNFVPGSEVYGEKRISVEN-NGEKIEYRVWNPFRSKLAAAVLGGVEQIHMPPGSKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVAKKRTNIIPII 240          
BLAST of CX300447 vs. ExPASy Swiss-Prot
Match: FBRL_DROME (rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila melanogaster GN=Fib PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 8.000e-53
Identity = 99/126 (78.57%), Postives = 113/126 (89.68%), Query Frame = 2
Query:    2 PHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPII 379
            PHRHEGVFIA+GKEDALVT+N V G  VY EKRISV+  +G K+EYR+WNPFRSKLAAAVLGGV+ I + PG +VLYLGAASGTTVSHVSD+VGP G+VYAVEFSHRSGRDL+N+AKKRTN+IPII
Sbjct:  115 PHRHEGVFIARGKEDALVTRNFVPGSEVYGEKRISVET-NGEKIEYRVWNPFRSKLAAAVLGGVEQIHMPPGSKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINVAKKRTNIIPII 239          
BLAST of CX300447 vs. ExPASy Swiss-Prot
Match: FBRL_TETTH (rRNA 2'-O-methyltransferase fibrillarin OS=Tetrahymena thermophila GN=FIB PE=2 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 5.733e-51
Identity = 96/125 (76.80%), Postives = 113/125 (90.40%), Query Frame = 2
Query:    5 HRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGVRVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPII 379
            HR EGVFI KG+++ALVTKN   GE+VYNEKR+SV+ E+G K+EYR+WNP+RSK+AAAV+GG+ +I IKPG +VLYLG ASGTTVSHV+DIVGP GVVYAVEFSHRSGRDLVNMAKKRTNV+PII
Sbjct:   70 HRLEGVFICKGQQEALVTKNFFPGESVYNEKRMSVE-ENGEKIEYRVWNPYRSKIAAAVVGGISDIHIKPGSKVLYLGGASGTTVSHVADIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVVPII 193          
The following BLAST results are available for this feature:
BLAST of CX300447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
FBRL1_ARATH1.007e-6392.86rRNA 2'-O-methyltransferase fibrillarin 1 OS=Arabi... [more]
FBRL2_ARATH2.931e-6392.06rRNA 2'-O-methyltransferase fibrillarin 2 OS=Arabi... [more]
FBRL_SCHPO1.840e-5781.75rRNA 2'-O-methyltransferase fibrillarin OS=Schizos... [more]
FBRL_RAT1.458e-5480.16rRNA 2'-O-methyltransferase fibrillarin OS=Rattus ... [more]
FBRL_MOUSE1.458e-5480.16rRNA 2'-O-methyltransferase fibrillarin OS=Mus mus... [more]
FBRL_HUMAN1.458e-5480.16rRNA 2'-O-methyltransferase fibrillarin OS=Homo sa... [more]
FBRL_XENLA2.487e-5481.10rRNA 2'-O-methyltransferase fibrillarin OS=Xenopus... [more]
FBRL_DROER1.612e-5379.37rRNA 2'-O-methyltransferase fibrillarin OS=Drosoph... [more]
FBRL_DROME8.000e-5378.57rRNA 2'-O-methyltransferase fibrillarin OS=Drosoph... [more]
FBRL_TETTH5.733e-5176.80rRNA 2'-O-methyltransferase fibrillarin OS=Tetrahy... [more]

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Properties
Property NameValue
Genbank descriptionC07010D02SK SaltLeaf1 Citrus clementina cDNA clone C07010D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300447 ID=CX300447; Name=CX300447; organism=Citrus clementina; type=EST; length=380bp
GCCTCATAGACACGAAGGAGTGTTCATTGCCAAGGGCAAAGAAGACGCCC
TTGTCACTAAGAATCTCGTCGCCGGTGAGGCTGTCTACAATGAGAAGAGG
ATCTCCGTCCAGAATGAAGATGGAACCAAAGTTGAGTATAGAATTTGGAA
TCCCTTCCGTTCCAAATTAGCTGCAGCTGTTCTTGGTGGTGTTGATAATA
TTTGGATTAAACCTGGTGTTAGGGTTCTATACCTTGGTGCTGCTTCCGGC
ACAACTGTCTCACATGTTTCGGACATTGTTGGCCCTAATGGAGTAGTTTA
TGCAGTGGAATTTTCTCATAGAAGTGGTAGAGACTTGGTCAATATGGCAA
AGAAGAGAACCAATGTTATACCCATAATTG
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