CX300450

Overview
NameCX300450
Unique NameCX300450
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300450_ssr300 microsatellite CX300450_ssr300:300..314. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4991 contig Ccv1_Contig4991:685..1087. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300450 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.861e-38
Identity = 76/84 (90.48%), Postives = 78/84 (92.86%), Query Frame = 3
Query:    3 RNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTFIS 254
            RN+ELD EKRLYPGGKFFDPLGLAADPEK A LQLAEIKHARLAMVAFLGFAVQA  TGKGPLNNWATHLSDPLHTTI+DTF S
Sbjct:  206 RNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 289          
BLAST of CX300450 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.576e-37
Identity = 74/84 (88.10%), Postives = 77/84 (91.67%), Query Frame = 3
Query:    3 RNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTFIS 254
            RN+ELD EKRLYPGGKFFDPLGLA+DP KKA LQLAEIKHARLAMV FLGFAVQA  TGKGPLNNWATHLSDPLHTTI+DTF S
Sbjct:  203 RNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286          
BLAST of CX300450 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.442e-22
Identity = 53/68 (77.94%), Postives = 60/68 (88.24%), Query Frame = 3
Query:    3 RNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWAT 206
            RNSELDPEKR+YPGG +FDPLGLAADPEK  TL+LAEIKH+RLAMVAFL FA+QA  TGKGP++  AT
Sbjct:  207 RNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273          
BLAST of CX300450 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.225e-18
Identity = 48/84 (57.14%), Postives = 56/84 (66.67%), Query Frame = 3
Query:    3 RNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAV-QAVVTGKGPLNNWATHLSDPLHTTILDTFI 251
            R  E DPEK+ YPGG F DPLG + DP K   L+L EIK+ RLAM+AF+GF V Q+   G GPL N ATHL+DP H  I D  I
Sbjct:  156 RTMEKDPEKKKYPGGAF-DPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 238          
BLAST of CX300450 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.811e-17
Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = 3
Query:   15 LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTIL 239
            LD E +L+PGG F DPLGLA DPE+ A L++ EIK+ RLAM A LGF +QA VTG+GP+ N A HLSDP    +L
Sbjct:  194 LDFEDKLHPGGPF-DPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLL 267          
BLAST of CX300450 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.883e-17
Identity = 41/65 (63.08%), Postives = 51/65 (78.46%), Query Frame = 3
Query:   33 LYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 227
            LYPGG F DPLGLA DPE+ A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  187 LYPGGSF-DPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 250          
BLAST of CX300450 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.883e-17
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 3
Query:   18 DPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 227
            + E  LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  184 EAEDLLYPGGSF-DPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252          
BLAST of CX300450 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.533e-16
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 3
Query:   15 LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 227
            +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  187 IDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253          
BLAST of CX300450 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.533e-16
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 3
Query:   15 LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 227
            +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  186 IDP---LYPGGSF-DPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252          
BLAST of CX300450 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.003e-16
Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 3
Query:   33 LYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 227
            LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:   39 LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 102          
The following BLAST results are available for this feature:
BLAST of CX300450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB4A_ARATH1.861e-3890.48Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH1.576e-3788.10Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4C_ARATH2.442e-2277.94Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB121_HORVU6.225e-1857.14Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB26_ARATH1.811e-1760.00Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB23_APIGR6.883e-1763.08Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SINAL6.883e-1761.43Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_PETSP1.533e-1661.97Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_PETSP1.533e-1661.97Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2D_SOLLC2.003e-1664.62Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC07010D05SK SaltLeaf1 Citrus clementina cDNA clone C07010D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300450 ID=CX300450; Name=CX300450; organism=Citrus clementina; type=EST; length=403bp
AAAGAAACTCAGAGCTTGACCCGGAGAAGAGACTCTACCCGGGAGGAAAG
TTTTTTGATCCTCTGGGCTTGGCCGCTGACCCGGAAAAGAAAGCCACCCT
TCAATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGGTTGCATTCCTTG
GCTTCGCTGTCCAAGCTGTTGTCACCGGAAAAGGCCCTCTCAACAACTGG
GCTACCCACTTGAGCGATCCTCTTCACACAACCATTCTTGACACCTTCAT
CTCTTAGATTTCTGGTGTAGCCTCCAGTACTTGGCAGTTGGCACTATTGT
TATTATTATTATTATATGCGCCTATCTTGTAAAAAGAATTATAACATTTG
ACAGCTTAAGGGGAATGCTATGGCTTCATATTTTGAAGTCATTTCATCTT
TGC
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