CX300450
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX300450 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 1.861e-38 Identity = 76/84 (90.48%), Postives = 78/84 (92.86%), Query Frame = 3 Query: 3 RNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTFIS 254 RN+ELD EKRLYPGGKFFDPLGLAADPEK A LQLAEIKHARLAMVAFLGFAVQA TGKGPLNNWATHLSDPLHTTI+DTF S Sbjct: 206 RNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 289
BLAST of CX300450 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 1.576e-37 Identity = 74/84 (88.10%), Postives = 77/84 (91.67%), Query Frame = 3 Query: 3 RNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTFIS 254 RN+ELD EKRLYPGGKFFDPLGLA+DP KKA LQLAEIKHARLAMV FLGFAVQA TGKGPLNNWATHLSDPLHTTI+DTF S Sbjct: 203 RNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286
BLAST of CX300450 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 2.442e-22 Identity = 53/68 (77.94%), Postives = 60/68 (88.24%), Query Frame = 3 Query: 3 RNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWAT 206 RNSELDPEKR+YPGG +FDPLGLAADPEK TL+LAEIKH+RLAMVAFL FA+QA TGKGP++ AT Sbjct: 207 RNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273
BLAST of CX300450 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 6.225e-18 Identity = 48/84 (57.14%), Postives = 56/84 (66.67%), Query Frame = 3 Query: 3 RNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAV-QAVVTGKGPLNNWATHLSDPLHTTILDTFI 251 R E DPEK+ YPGG F DPLG + DP K L+L EIK+ RLAM+AF+GF V Q+ G GPL N ATHL+DP H I D I Sbjct: 156 RTMEKDPEKKKYPGGAF-DPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 238
BLAST of CX300450 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 1.811e-17 Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = 3 Query: 15 LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTIL 239 LD E +L+PGG F DPLGLA DPE+ A L++ EIK+ RLAM A LGF +QA VTG+GP+ N A HLSDP +L Sbjct: 194 LDFEDKLHPGGPF-DPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLL 267
BLAST of CX300450 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 6.883e-17 Identity = 41/65 (63.08%), Postives = 51/65 (78.46%), Query Frame = 3 Query: 33 LYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 227 LYPGG F DPLGLA DPE+ A L++ E+K+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 187 LYPGGSF-DPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 250
BLAST of CX300450 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 6.883e-17 Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 3 Query: 18 DPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 227 + E LYPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 184 EAEDLLYPGGSF-DPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252
BLAST of CX300450 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.533e-16 Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 3 Query: 15 LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 227 +DP LYPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 187 IDP---LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
BLAST of CX300450 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.533e-16 Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 3 Query: 15 LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 227 +DP LYPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 186 IDP---LYPGGSF-DPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252
BLAST of CX300450 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.003e-16 Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 3 Query: 33 LYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 227 LYPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 39 LYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 102 The following BLAST results are available for this feature:
BLAST of CX300450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX300450 ID=CX300450; Name=CX300450; organism=Citrus clementina; type=EST; length=403bpback to top |