CX300476

Overview
NameCX300476
Unique NameCX300476
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300476 vs. ExPASy Swiss-Prot
Match: SMD2_DROME (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=snRNP2 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.300e-42
Identity = 82/90 (91.11%), Postives = 86/90 (95.56%), Query Frame = 3
Query:  117 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 386
            FNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKK  PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct:   23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112          
BLAST of CX300476 vs. ExPASy Swiss-Prot
Match: SMD2_MOUSE (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.941e-42
Identity = 80/90 (88.89%), Postives = 87/90 (96.67%), Query Frame = 3
Query:  117 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 386
            FNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct:   24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113          
BLAST of CX300476 vs. ExPASy Swiss-Prot
Match: SMD2_HUMAN (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.941e-42
Identity = 80/90 (88.89%), Postives = 87/90 (96.67%), Query Frame = 3
Query:  117 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 386
            FNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct:   24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113          
BLAST of CX300476 vs. ExPASy Swiss-Prot
Match: SMD2_BOVIN (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.941e-42
Identity = 80/90 (88.89%), Postives = 87/90 (96.67%), Query Frame = 3
Query:  117 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 386
            FNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct:   24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113          
BLAST of CX300476 vs. ExPASy Swiss-Prot
Match: SMD2_CAEEL (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans GN=snr-4 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 8.722e-39
Identity = 76/90 (84.44%), Postives = 83/90 (92.22%), Query Frame = 3
Query:  117 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 386
            FN GPLS+L  SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKKA  V KDRFISKMFLRGDSVI+V++NP
Sbjct:   24 FNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113          
BLAST of CX300476 vs. ExPASy Swiss-Prot
Match: SMD2_DICDI (Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum GN=snrpd2 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.943e-38
Identity = 75/89 (84.27%), Postives = 83/89 (93.26%), Query Frame = 3
Query:  120 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 386
            + GPLS+LM SV NNTQVLIN RNNKKLLGRVRAFDRHCNMVLENV+E+WTE+PKT KGKKKA P+NKDRFISKMFLRGDSVI+VL+NP
Sbjct:   16 SNGPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVLKNP 104          
BLAST of CX300476 vs. ExPASy Swiss-Prot
Match: SMD2_SCHPO (Probable small nuclear ribonucleoprotein Sm D2 OS=Schizosaccharomyces pombe GN=smd2 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.322e-30
Identity = 64/90 (71.11%), Postives = 74/90 (82.22%), Query Frame = 3
Query:  117 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 386
            F+ GPLSVL  +VKN+ QVLINCRNNKKLL RV+AFDRH NMVLENV+EMWTE  +T  G KK   +NKDRFISKMFLRGD V++V+R P
Sbjct:   25 FSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASG-KKGKAINKDRFISKMFLRGDGVVLVVRIP 113          
BLAST of CX300476 vs. ExPASy Swiss-Prot
Match: SMD2_YEAST (Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae GN=SMD2 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.265e-21
Identity = 49/90 (54.44%), Postives = 67/90 (74.44%), Query Frame = 3
Query:  117 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 386
            F  GP+S++  ++   T V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE       KK    +N++RFISK+FLRGDSVI+VL+ P
Sbjct:   26 FKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE-------KKGKNVINRERFISKLFLRGDSVIVVLKTP 108          
The following BLAST results are available for this feature:
BLAST of CX300476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SMD2_DROME1.300e-4291.11Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_MOUSE4.941e-4288.89Small nuclear ribonucleoprotein Sm D2 OS=Mus muscu... [more]
SMD2_HUMAN4.941e-4288.89Small nuclear ribonucleoprotein Sm D2 OS=Homo sapi... [more]
SMD2_BOVIN4.941e-4288.89Small nuclear ribonucleoprotein Sm D2 OS=Bos tauru... [more]
SMD2_CAEEL8.722e-3984.44Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_DICDI1.943e-3884.27Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_SCHPO3.322e-3071.11Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_YEAST1.265e-2154.44Small nuclear ribonucleoprotein Sm D2 OS=Saccharom... [more]
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Properties
Property NameValue
Genbank descriptionC07010F07SK SaltLeaf1 Citrus clementina cDNA clone C07010F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300476 ID=CX300476; Name=CX300476; organism=Citrus clementina; type=EST; length=585bp
CTTCACCCTCTCGCTCTCTCTAAAGTCTATACCCTGTCGTCGTTTGGGAG
ACTCGAGTGAAGATGAGTAGAGCAATGGATGAGGATACCACTGGTGGAAA
GACTGAGGAAGAGGAATTCAACACTGGGCCACTTTCTGTTCTGATGATGA
GTGTTAAAAATAACACTCAGGTGCTAATCAACTGCCGGAACAACAAGAAG
CTTCTTGGCCGTGTGAGGGCATTTGATCGACACTGCAACATGGTCCTTGA
AAATGTCAGGGAGATGTGGACTGAGTTGCCCAAGACTGGGAAAGGAAAGA
AGAAAGCTCTTCCGGTCAACAAAGACAGATTCATCAGCAAGATGTTCCTT
CGAGGGGACTCTGTAATCATTGTCCTTAGAAATCCCAAGTGATATAGCGG
TCTTTAGAAATCATTCTCGATGATGTTAGAACGGTTGTCTTGATATTTGT
GGACTATGTTGCGTGACAGATCCATTTACATTTTTAGGGATTAACATGTT
TGGTCTGAAAGTTTATTATAAAGTCAGTGACTTTTATTTGTCTCCACTAG
CCCGTTGATTTTTGTAGTCAGGTGATTATATTACC
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