CX300507

Overview
NameCX300507
Unique NameCX300507
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length514
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9703 contig Ccv1_Contig9703:99..609. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300507 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.470e-22
Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 2
Query:    2 SDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVTDVQAAETEGNCKCGPTCACVNCTCG 196
            SDTCGNCDCAD++QCVKKGSSY AD +ET+ S ++  VV D  AAE +G CKCGP+C+C NCTCG
Sbjct:    2 SDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CX300507 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.427e-19
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 2
Query:    8 TCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVTDVQAAETEGNCKCGPTCACVNCTCGS 199
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CX300507 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.348e-18
Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = 2
Query:    2 SDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVTDVQAAETEGNCKCGPTCACVNCTC 193
            SD CGNCDCAD SQCVKKG+S   D VETD S++  VV+  V AAE+ G CKCG +C CVNCTC
Sbjct:    2 SDKCGNCDCADSSQCVKKGNS--IDIVETDKSYIEDVVM-GVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CX300507 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.814e-16
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 2
Query:    2 SDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVTDVQAAETEGNCKCGPTCACVNCTCG 196
            S  C NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    2 SGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CX300507 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.333e-15
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 2
Query:    2 SDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVTDVQAAETEGNCKCGPTCACVNCTC 193
            S  C NCDC+D SQC KKG S+    VET+   + TV++ D  AAE  GNCKCGP+CACV+C C
Sbjct:    2 SSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVIM-DAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CX300507 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.969e-15
Identity = 35/65 (53.85%), Postives = 42/65 (64.62%), Query Frame = 2
Query:    2 SDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVTDVQAAETEGNCKCGPTCACVNCTCG 196
            SD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    2 SDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CX300507 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.969e-15
Identity = 35/65 (53.85%), Postives = 42/65 (64.62%), Query Frame = 2
Query:    2 SDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVTDVQAAETEGNCKCGPTCACVNCTCG 196
            SD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    2 SDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CX300507 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.128e-13
Identity = 32/65 (49.23%), Postives = 40/65 (61.54%), Query Frame = 2
Query:    2 SDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVTDVQAAETEGNCKCGPTCACVNCTCG 196
            SD CGNCDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    2 SDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of CX300507 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.086e-13
Identity = 31/65 (47.69%), Postives = 40/65 (61.54%), Query Frame = 2
Query:    2 SDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVTDVQAAETEGNCKCGPTCACVNCTCG 196
            SD CG+CDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    2 SDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CX300507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA1.470e-2267.69Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC4.427e-1960.94Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE8.348e-1865.63Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MALDO7.814e-1658.46Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3_PRUAV1.333e-1556.25Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3A_ORYSJ2.969e-1553.85Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI2.969e-1553.85Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ2.128e-1349.23Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI8.086e-1347.69Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionC07011A07SK SaltLeaf1 Citrus clementina cDNA clone C07011A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300507 ID=CX300507; Name=CX300507; organism=Citrus clementina; type=EST; length=514bp
GTCGGACACCTGCGGCAACTGCGACTGCGCTGACAGGAGCCAGTGTGTGA
AGAAGGGAAGCAGCTATGCTGCTGACTTCGTCGAGACTGACTTGAGCTTT
GTCAGCACCGTTGTTGTCACGGACGTTCAGGCTGCTGAGACTGAAGGTAA
CTGCAAGTGCGGCCCCACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTC
ACTAAAATGCAACACCTGCAGCAAAAAAAAGAAGCTGCAAGTGTGCCTAA
AAATTGTGGGGGTTAATGAAAAAAGGAAGGGTGATTAAAAAAAAGAAAAA
ATTCTCTAACTTCGTTTTTATGATGGTCTAATAACTAGTGTGTGGAGTGA
TGTGCGTGTTGTGTCACCCAACAACTCGTAATGGTTTTGTGTTTCCTTCT
TCAAAAATCAATGTAATATATGGCCATGGCCATGACCGTGGCCTTGTGTG
GTTTAATTTTAATGTATTATTGTTAGTCAAAAAAAAAAAAAAAAAACTCG
AGGGGGGGCCCGGT
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