CX300520

Overview
NameCX300520
Unique NameCX300520
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300520_ssr58 microsatellite CX300520_ssr58:58..75. BLAST: Citrus ESTs to Prunus persica proteins V1
CX300520_ssr74 microsatellite CX300520_ssr74:74..89. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300520 vs. ExPASy Swiss-Prot
Match: PGR5_ARATH (Protein PROTON GRADIENT REGULATION 5, chloroplastic OS=Arabidopsis thaliana GN=PGR5 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.434e-40
Identity = 89/135 (65.93%), Postives = 107/135 (79.26%), Query Frame = 2 
Query:  107 MAATSVCVAG-----LSSSFHGSWGASFANGGEEYR-MLARSVPNVRVAR----PIRMQPMMGNINEGKGIFAPVVVLTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA 481
            MAA S+   G     + +SF+G WG+S +  GE+Y+ ML+++V   + AR     IR  PMM N+NEGKG+FAP+VV+TRN++GKKRFNQ RGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA
Sbjct:    1 MAAASISAIGCNQTLIGTSFYGGWGSSIS--GEDYQTMLSKTVAPPQQARVSRKAIRAVPMMKNVNEGKGLFAPLVVVTRNLVGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA 133
The following BLAST results are available for this feature:
BLAST of CX300520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PGR5_ARATH3.434e-4065.93Protein PROTON GRADIENT REGULATION 5, chloroplasti... [more]
back to top
Properties
Property NameValue
Genbank descriptionC07011B11SK SaltLeaf1 Citrus clementina cDNA clone C07011B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300520 ID=CX300520; Name=CX300520; organism=Citrus clementina; type=EST; length=659bp
AGGCACAAACACCCTAGCAAACCCTCTGAGCCTCCTTCACTGAAAGCACA
AGCTATTTGTGTGTGTGTGTGTGTGCGTGCGTGCGTGCGTGTTGAGCGTT
TCAATTATGGCTGCTACATCAGTGTGTGTAGCTGGGTTATCATCTTCGTT
TCATGGAAGCTGGGGAGCTTCGTTTGCTAATGGTGGTGAAGAATACAGGA
TGTTGGCAAGATCAGTGCCGAATGTTAGAGTGGCAAGACCCATTAGAATG
CAACCGATGATGGGGAACATTAATGAAGGCAAAGGCATTTTTGCTCCTGT
TGTTGTTCTCACTCGTAATATCATTGGCAAGAAGAGGTTCAATCAGTTTA
GAGGCAAAGCTATTGCCTTGCATTCTCAGGTAATTACTGAATTCTGCAAA
TCAATAGGAGCTGATGCAAAGCAAAGGCAAGGCCTCATCCGTTTGGCTAA
GAAGAATGGAGAAAGACTTGGCTTCCTTGCATGATAAGAAAAACATTTAT
TGTTTTGTATTGTTATAACCATGAGATGTTTTAAGTTTATAGTTTTTTCA
AGTGCTTTCTAATGTAAACATACTTTTCTTCAGCTGGGTGTGTCCCAGAN
ATAGAATGTAACCTAAGATTAATCCATCCTCTTCTACACTTATCATTCTT
CAGTTTAGC
back to top