CX300636

Overview
NameCX300636
Unique NameCX300636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300636 vs. ExPASy Swiss-Prot
Match: RS211_ARATH (40S ribosomal protein S21-1 OS=Arabidopsis thaliana GN=RPS21B PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.535e-22
Identity = 44/56 (78.57%), Postives = 53/56 (94.64%), Query Frame = 3
Query:   21 QDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKVEVRQQ 188
            +DHA+VQ+NIGH+DA+G+YTGQF+TFALCGFVRAQGD DS +DRLWQKKKVE +QQ
Sbjct:   27 KDHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKVEAKQQ 82          
BLAST of CX300636 vs. ExPASy Swiss-Prot
Match: RS212_ARATH (40S ribosomal protein S21-2 OS=Arabidopsis thaliana GN=RPS21C PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.610e-21
Identity = 43/56 (76.79%), Postives = 53/56 (94.64%), Query Frame = 3
Query:   21 QDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKVEVRQQ 188
            +DHA+VQ+NIGH+DA+G+YTGQF+TFALCGFVRAQGD DS +DRLWQKKKVE +Q+
Sbjct:   27 KDHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKVEAKQK 82          
BLAST of CX300636 vs. ExPASy Swiss-Prot
Match: RS21_ORYSJ (40S ribosomal protein S21 OS=Oryza sativa subsp. japonica GN=RPS21 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.507e-19
Identity = 41/56 (73.21%), Postives = 51/56 (91.07%), Query Frame = 3
Query:   21 QDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKVEVRQQ 188
            +DHA+VQINIGHVD +G+Y G+F+TFAL GF+RAQGD DSA+DRLWQK+K EV+QQ
Sbjct:   27 KDHASVQINIGHVDENGLYDGRFTTFALSGFIRAQGDADSALDRLWQKRKAEVKQQ 82          
BLAST of CX300636 vs. ExPASy Swiss-Prot
Match: RS21_MAIZE (40S ribosomal protein S21 OS=Zea mays GN=RPS21 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.385e-19
Identity = 40/55 (72.73%), Postives = 50/55 (90.91%), Query Frame = 3
Query:   21 QDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKVEVRQ 185
            +DHA+VQINIGH+DA+G+Y G F+TFAL GFVRAQGD DS++DRLWQKKK E++Q
Sbjct:   27 KDHASVQINIGHLDANGLYDGHFTTFALSGFVRAQGDADSSLDRLWQKKKAEIKQ 81          
BLAST of CX300636 vs. ExPASy Swiss-Prot
Match: RS21_CYAPA (40S ribosomal protein S21 OS=Cyanophora paradoxa GN=RPS21 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.781e-12
Identity = 31/48 (64.58%), Postives = 41/48 (85.42%), Query Frame = 3
Query:   24 DHAAVQINIGHVDAD-GIYTGQFSTFALCGFVRAQGDGDSAIDRLWQK 164
            DHAAVQIN+GHVD + G+YTG ++TFALCGFVR+ G+ D+A++RL  K
Sbjct:   28 DHAAVQINVGHVDPNSGLYTGDYTTFALCGFVRSMGESDAALNRLCVK 75          
BLAST of CX300636 vs. ExPASy Swiss-Prot
Match: RS21_DICDI (40S ribosomal protein S21 OS=Dictyostelium discoideum GN=rps21 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.366e-11
Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = 3
Query:   21 QDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKK 167
            +DHA+VQINIGHV+A+GIY G+ + FA CGF+R  G  D+A++RL Q+K
Sbjct:   24 KDHASVQINIGHVNAEGIYNGEQTIFAFCGFLRNNGQSDAALNRLAQQK 72          
The following BLAST results are available for this feature:
BLAST of CX300636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RS211_ARATH5.535e-2278.5740S ribosomal protein S21-1 OS=Arabidopsis thalian... [more]
RS212_ARATH1.610e-2176.7940S ribosomal protein S21-2 OS=Arabidopsis thalian... [more]
RS21_ORYSJ1.507e-1973.2140S ribosomal protein S21 OS=Oryza sativa subsp. j... [more]
RS21_MAIZE4.385e-1972.7340S ribosomal protein S21 OS=Zea mays GN=RPS21 PE=... [more]
RS21_CYAPA6.781e-1264.5840S ribosomal protein S21 OS=Cyanophora paradoxa G... [more]
RS21_DICDI3.366e-1159.1840S ribosomal protein S21 OS=Dictyostelium discoid... [more]
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Properties
Property NameValue
Genbank descriptionC07012E06SK SaltLeaf1 Citrus clementina cDNA clone C07012E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300636 ID=CX300636; Name=CX300636; organism=Citrus clementina; type=EST; length=414bp
ACAAACAGGCTCATCACCTCCAGGATCACGCCGCTGTCCAGATCAACATC
GGGCACGTTGATGCTGATGGCATTTACACCGGTCAATTCTCCACTTTCGC
TCTCTGCGGCTTCGTCCGCGCTCAGGGTGACGGTGACAGCGCCATTGACA
GGCTTTGGCAAAAGAAGAAAGTTGAGGTCCGACAACAATAATTTTCCATT
AAAGCAAGTTATGTGTCTTCTCTAGCAGTTGTCTTCTTCTGCAAGGGTTG
GAATGTGATTGCAACGACTCGTTTGTTCTAGTTTTACTTATGTGGACCAT
GTTGAAATTTACTTCTGCTTTTGGACCATGATTAGCACTTAGTTTGTTTA
TCTGTCGAACTTAATATATGGTCACGATTTGCTTTACAGCTAANAAAAAA
AAAAAAAAAAAAAA
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