CX300647

Overview
NameCX300647
Unique NameCX300647
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length629
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300647 vs. ExPASy Swiss-Prot
Match: UFC1_DICDI (Probable Ufm1-conjugating enzyme 1 OS=Dictyostelium discoideum GN=ufc1 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.719e-49
Identity = 90/157 (57.32%), Postives = 109/157 (69.43%), Query Frame = 1
Query:   22 QGFDRLTQMNKSNDNDWFRISAANPEGTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKVXXXXXXXXXXXXXXXXXXXXXXXWRL*MYRGGKICLTVHFKPLWAKNCPRFGIAHALCLGLAPWLAAEIPILVDSGMIKHKDD 492
            Q   +  ++NK  DNDWF I + NP GTRW GKCWY++N  KYEFDL+FD+PVTYP TAPE+ +P+LDGKT+K                            MYRGGKICLT+HFKPLW++N P FGIAHAL LGLAPWLAAE+P LVD+G+IKHK+D
Sbjct:   36 QALIKYVEINKKADNDWFNIES-NPLGTRWQGKCWYIYNFKKYEFDLEFDMPVTYPETAPEIAIPELDGKTEK----------------------------MYRGGKICLTIHFKPLWSRNVPHFGIAHALALGLAPWLAAEVPHLVDNGIIKHKED 163          
BLAST of CX300647 vs. ExPASy Swiss-Prot
Match: UFC1_BOVIN (Ufm1-conjugating enzyme 1 OS=Bos taurus GN=UFC1 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.546e-47
Identity = 90/166 (54.22%), Postives = 110/166 (66.27%), Query Frame = 1
Query:    4 QRLKWS-QGFDRLTQMNKSNDNDWFRISAANPEGTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKVXXXXXXXXXXXXXXXXXXXXXXXWRL*MYRGGKICLTVHFKPLWAKNCPRFGIAHALCLGLAPWLAAEIPILVDSGMIKHKDDVS 498
            QRLK   Q   R  + NK+ DNDWFR+ + N EGTRW GKCWY+H+LLKYEFD++FDIP+TYP TAPE+ +P+LDGKT K                            MYRGGKICLT HFKPLWA+N P+FG+AH + LGL PWLA EIP L+  G+I+HK+  S
Sbjct:   30 QRLKEEYQSLIRYVENNKNADNDWFRLES-NKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAK----------------------------MYRGGKICLTDHFKPLWARNVPKFGLAHLMALGLGPWLAVEIPDLIQKGVIQHKEKCS 166          
BLAST of CX300647 vs. ExPASy Swiss-Prot
Match: UFC1_HUMAN (Ufm1-conjugating enzyme 1 OS=Homo sapiens GN=UFC1 PE=1 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 7.754e-47
Identity = 89/163 (54.60%), Postives = 109/163 (66.87%), Query Frame = 1
Query:    4 QRLKWS-QGFDRLTQMNKSNDNDWFRISAANPEGTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKVXXXXXXXXXXXXXXXXXXXXXXXWRL*MYRGGKICLTVHFKPLWAKNCPRFGIAHALCLGLAPWLAAEIPILVDSGMIKHKD 489
            QRLK   Q   R  + NK+ DNDWFR+ + N EGTRW GKCWY+H+LLKYEFD++FDIP+TYP TAPE+ +P+LDGKT K                            MYRGGKICLT HFKPLWA+N P+FG+AH + LGL PWLA EIP L+  G+I+HK+
Sbjct:   30 QRLKEEYQSLIRYVENNKNADNDWFRLES-NKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAK----------------------------MYRGGKICLTDHFKPLWARNVPKFGLAHLMALGLGPWLAVEIPDLIQKGVIQHKE 163          
BLAST of CX300647 vs. ExPASy Swiss-Prot
Match: UFC1_MOUSE (Ufm1-conjugating enzyme 1 OS=Mus musculus GN=Ufc1 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.256e-46
Identity = 87/166 (52.41%), Postives = 110/166 (66.27%), Query Frame = 1
Query:    4 QRLKWS-QGFDRLTQMNKSNDNDWFRISAANPEGTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKVXXXXXXXXXXXXXXXXXXXXXXXWRL*MYRGGKICLTVHFKPLWAKNCPRFGIAHALCLGLAPWLAAEIPILVDSGMIKHKDDVS 498
            QRLK   Q   R  + NK++DNDWFR+ + N EGTRW GKCWY+H+ LKYEFD++F+IP+TYP TAPE+ +P+LDGKT K                            MYRGGKICLT HFKPLWA+N P+FG+AH + LGL PWLA E+P L+  G+I+HK+  S
Sbjct:   30 QRLKEEYQSLIRYVENNKNSDNDWFRLES-NKEGTRWFGKCWYIHDFLKYEFDIEFEIPITYPTTAPEIAVPELDGKTAK----------------------------MYRGGKICLTDHFKPLWARNVPKFGLAHLMALGLGPWLAVEVPDLIQKGVIQHKEKCS 166          
BLAST of CX300647 vs. ExPASy Swiss-Prot
Match: UFC1_RAT (Ufm1-conjugating enzyme 1 OS=Rattus norvegicus GN=Ufc1 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 8.573e-46
Identity = 86/163 (52.76%), Postives = 108/163 (66.26%), Query Frame = 1
Query:    4 QRLKWS-QGFDRLTQMNKSNDNDWFRISAANPEGTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKVXXXXXXXXXXXXXXXXXXXXXXXWRL*MYRGGKICLTVHFKPLWAKNCPRFGIAHALCLGLAPWLAAEIPILVDSGMIKHKD 489
            QRLK   Q   R  + NK+ DNDWFR+ + N EGTRW GKCWY+H+ LKYEFD++F+IP+TYP TAPE+ +P+LDGKT K                            MYRGGKICLT HFKPLWA+N P+FG+AH + LGL PWLA E+P L+  G+I+HK+
Sbjct:   30 QRLKEEYQSLIRYVENNKNADNDWFRLES-NKEGTRWFGKCWYIHDFLKYEFDIEFEIPITYPTTAPEIAVPELDGKTAK----------------------------MYRGGKICLTDHFKPLWARNVPKFGLAHLMALGLGPWLAVEVPDLIQKGVIQHKE 163          
BLAST of CX300647 vs. ExPASy Swiss-Prot
Match: UFC1_CAEEL (Probable Ufm1-conjugating enzyme OS=Caenorhabditis elegans GN=C40H1.6 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.976e-42
Identity = 79/148 (53.38%), Postives = 98/148 (66.22%), Query Frame = 1
Query:   43 QMNKSNDNDWFRISAANPEGTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKVXXXXXXXXXXXXXXXXXXXXXXXWRL*MYRGGKICLTVHFKPLWAKNCPRFGIAHALCLGLAPWLAAEIPILVDSGMIKHK 486
            Q NK  D DWF++ + N  GT+W GKCWY HN++KYEFD++FDIP+TYP TAPE+ LP+LDGKT K                            MYRGGKICL+ HFKPLWA+N P+FGIAHA  LGL PW+A EIP L++ G+I+ K
Sbjct:   43 QNNKDCDRDWFQLES-NERGTKWFGKCWYFHNMVKYEFDVEFDIPITYPVTAPEIALPELDGKTAK----------------------------MYRGGKICLSEHFKPLWARNTPKFGIAHAFALGLGPWMAVEIPDLIEKGLIQPK 161          
The following BLAST results are available for this feature:
BLAST of CX300647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
UFC1_DICDI3.719e-4957.32Probable Ufm1-conjugating enzyme 1 OS=Dictyosteliu... [more]
UFC1_BOVIN4.546e-4754.22Ufm1-conjugating enzyme 1 OS=Bos taurus GN=UFC1 PE... [more]
UFC1_HUMAN7.754e-4754.60Ufm1-conjugating enzyme 1 OS=Homo sapiens GN=UFC1 ... [more]
UFC1_MOUSE2.256e-4652.41Ufm1-conjugating enzyme 1 OS=Mus musculus GN=Ufc1 ... [more]
UFC1_RAT8.573e-4652.76Ufm1-conjugating enzyme 1 OS=Rattus norvegicus GN=... [more]
UFC1_CAEEL1.976e-4253.38Probable Ufm1-conjugating enzyme OS=Caenorhabditis... [more]
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Properties
Property NameValue
Genbank descriptionC07012F06SK SaltLeaf1 Citrus clementina cDNA clone C07012F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300647 ID=CX300647; Name=CX300647; organism=Citrus clementina; type=EST; length=629bp
ACGCAGCGGCTTAAGTGGAGTCAAGGCTTTGATCGCCTAACACAGATGAA
TAAGTCCAACGACAACGATTGGTTCCGCATCTCAGCGGCCAATCCGGAGG
GGACACGTTGGACGGGCAAGTGCTGGTACGTTCACAACCTCTTAAAGTAC
GAATTCGATCTCCAGTTTGATATTCCGGTTACGTACCCCGCCACGGCCCC
CGAGCTTGAGCTCCCCCAACTCGATGGCAAGACCCAGAAGGTTTGATGAT
TCTTTCTTTACCCATTTCCCCCGAATTTTTAATTGTTTTAAATTGTTTAT
ATTTTGTTTTTGTGGCGTTTGTAGATGTACAGAGGAGGGAAGATTTGCTT
GACCGTACATTTCAAGCCACTTTGGGCTAAAAACTGTCCTAGGTTTGGTA
TAGCACATGCACTTTGTCTTGGTCTTGCTCCATGGCTTGCAGCAGAGATT
CCCATTCTTGTTGATTCCGGAATGATTAAGCACAAAGATGATGTGAGCGG
ATCTAGTGAGTCTTAGTTAGTTAATGTAACATTAAGACTGTAAAAGGAAT
GATGATTTTGCAAATATTTTGTTTGTGGGCTATCAATGACTAATGATTTT
GACCTGCCTTGCNAAAAAAAAAAAAAAAA
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