CX305123

Overview
NameCX305123
Unique NameCX305123
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length474
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX305123_ssr128 microsatellite CX305123_ssr128:128..139. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9835 contig Ccv1_Contig9835:197..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305123 vs. ExPASy Swiss-Prot
Match: PR4A_TOBAC (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 3.699e-40
Identity = 72/91 (79.12%), Postives = 79/91 (86.81%), Query Frame = -3
Query:  200 WDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 472
            WDA+KPLAWRQKYGWTAFC   GP GQ +CGRCLRVTN+GTG Q  VRIVDQC+NGGLDLD  VF +LDTNG+GYQQG LTV+YEFVNCND
Sbjct:   57 WDADKPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQTTVRIVDQCSNGGLDLDVNVFNQLDTNGVGYQQGHLTVNYEFVNCND 147          
BLAST of CX305123 vs. ExPASy Swiss-Prot
Match: PR4B_TOBAC (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.398e-39
Identity = 71/91 (78.02%), Postives = 78/91 (85.71%), Query Frame = -3
Query:  200 WDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 472
            WDA+KPLAWRQKYGWTAFC   GP GQ +CGRCLRVTN+GTG Q  VRIVDQC+NGGLDLD  VF +LDTNG+GYQQG L V+YEFVNCND
Sbjct:   57 WDADKPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQATVRIVDQCSNGGLDLDVNVFNQLDTNGLGYQQGHLIVNYEFVNCND 147          
BLAST of CX305123 vs. ExPASy Swiss-Prot
Match: PRP2_SOLLC (Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 3.828e-37
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = -3
Query:  206 WDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNC 472
            WDA+KPL WR++YGWTAFC   GP GQA+CGRCLRVTN+GTG Q+ VRIVDQC NGGLDLD  VF +LDTNG+GYQ+G L V+YEFVNC
Sbjct:   55 WDADKPLEWRRRYGWTAFCGPAGPTGQASCGRCLRVTNTGTGTQETVRIVDQCRNGGLDLDVNVFNRLDTNGLGYQRGNLNVNYEFVNC 143          
BLAST of CX305123 vs. ExPASy Swiss-Prot
Match: BARW_HORVU (Barwin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 5.527e-36
Identity = 68/92 (73.91%), Postives = 76/92 (82.61%), Query Frame = -3
Query:  200 WDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 472
            WDA+KPL+WR KYGWTAFC   GP GQAACG+CLRVTN  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:   34 WDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 125          
BLAST of CX305123 vs. ExPASy Swiss-Prot
Match: WHW2_WHEAT (Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 4.679e-35
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = -3
Query:  200 WDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 472
            WDA+KPL+WR KYGWTAFC   G  GQAACG+CLRVTN  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:   57 WDASKPLSWRSKYGWTAFCGPAGAHGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 148          
BLAST of CX305123 vs. ExPASy Swiss-Prot
Match: WIN2_SOLTU (Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.322e-34
Identity = 63/91 (69.23%), Postives = 75/91 (82.42%), Query Frame = -3
Query:  200 WDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 472
            WDANKP AWR KYGWTAFC   GP G+ +CG+CLRVTN+ TGAQ  VRIVDQC+NGGLDLD  VF+++DT+G+G QQG L V+Y+FVNC D
Sbjct:  108 WDANKPYAWRSKYGWTAFCGPVGPRGRDSCGKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDINVFQQIDTDGVGNQQGHLIVNYQFVNCGD 198          
BLAST of CX305123 vs. ExPASy Swiss-Prot
Match: WHW1_WHEAT (Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.033e-34
Identity = 65/92 (70.65%), Postives = 75/92 (81.52%), Query Frame = -3
Query:  200 WDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 472
            WDA+KPL+WR KYGWTAFC   G  GQA+CG+CL+VTN  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:   55 WDASKPLSWRSKYGWTAFCGPAGAHGQASCGKCLQVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 146          
BLAST of CX305123 vs. ExPASy Swiss-Prot
Match: HEVE_HEVBR (Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.505e-33
Identity = 60/91 (65.93%), Postives = 76/91 (83.52%), Query Frame = -3
Query:  200 WDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 472
            WDANKP +WR KYGWTAFC   G  GQ++CG+CL VTN+GTGA+  VRIVDQC+NGGLDLD  VF++LDT+G GY++G +TV+Y+FV+C D
Sbjct:   99 WDANKPYSWRSKYGWTAFCGPVGAHGQSSCGKCLSVTNTGTGAKTTVRIVDQCSNGGLDLDVNVFRQLDTDGKGYERGHITVNYQFVDCGD 189          
BLAST of CX305123 vs. ExPASy Swiss-Prot
Match: WIN1_SOLTU (Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 4.380e-33
Identity = 61/91 (67.03%), Postives = 75/91 (82.42%), Query Frame = -3
Query:  200 WDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 472
            WDANKPL+WR+KYGWTAFC   GP G+ +CG+CLRVTN+ TGAQ  VRIVDQC+NGGLDLD  VF+++DT+G G  QG L V+Y+FV+C D
Sbjct:  109 WDANKPLSWRKKYGWTAFCGPVGPRGRDSCGKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDVNVFRQIDTDGNGNHQGHLIVNYQFVDCGD 199          
BLAST of CX305123 vs. ExPASy Swiss-Prot
Match: PR4_PRUPE (Pathogenesis-related protein PR-4 (Fragment) OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 7.470e-33
Identity = 61/91 (67.03%), Postives = 73/91 (80.22%), Query Frame = -3
Query:  200 WDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 472
            WDA+KPL+WR KYGWTAFC   GP GQ +CG+CL VTN+GTGA+  VRIVDQC+NGGLDLD  VF ++DTNG G  QG L V+Y+FV+C D
Sbjct:   17 WDADKPLSWRSKYGWTAFCGPVGPTGQDSCGKCLLVTNTGTGAKVTVRIVDQCSNGGLDLDVNVFNQIDTNGQGNAQGHLIVNYDFVDCGD 107          
The following BLAST results are available for this feature:
BLAST of CX305123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PR4A_TOBAC3.699e-4079.12Pathogenesis-related protein PR-4A OS=Nicotiana ta... [more]
PR4B_TOBAC2.398e-3978.02Pathogenesis-related protein PR-4B OS=Nicotiana ta... [more]
PRP2_SOLLC3.828e-3774.16Pathogenesis-related protein P2 OS=Solanum lycoper... [more]
BARW_HORVU5.527e-3673.91Barwin OS=Hordeum vulgare PE=1 SV=1[more]
WHW2_WHEAT4.679e-3572.83Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1[more]
WIN2_SOLTU2.322e-3469.23Wound-induced protein WIN2 OS=Solanum tuberosum GN... [more]
WHW1_WHEAT3.033e-3470.65Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1[more]
HEVE_HEVBR1.505e-3365.93Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2[more]
WIN1_SOLTU4.380e-3367.03Wound-induced protein WIN1 OS=Solanum tuberosum GN... [more]
PR4_PRUPE7.470e-3367.03Pathogenesis-related protein PR-4 (Fragment) OS=Pr... [more]

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Properties
Property NameValue
Genbank descriptionC18001D04Rv Drought1 Citrus clementina cDNA clone C18001D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305123 ID=CX305123; Name=CX305123; organism=Citrus clementina; type=EST; length=474bp
TTTTTTTTTTTTTTTTTTTTTTTGATAAAAAAAGGAAACTTTTATTACAT
AACTGTAGTGCCCATGAGCACTTCTTGATACTTCATCAGAAGTTTTATTT
TATTTATGAACTAAGTATATAGAGGGATAATTAATTAATAAATTAACCCT
ATTACAGCATTAAGCTTCGATCGATCATGGAATTATAGATGGTGCTTTAA
TCATTGCAGTTCACAAACTCGTAGCTGACAGTAAGGAAGCCTTGTTGATA
GCCTATCCCATTGGTGTCCAATTTCTTGAACACTCCTTCGTCCAAATCTA
AGCCTCCATTGGCACACTGATCAACAATTCTCACAATTTGTTGGGCTCCT
GTACCACTGTTTGTGACCCTTAAGCACCTGCCACAAGCAGCTTGTCCAAT
GGGTCCGCCCGAATGACAGAAAGCAGTCCAGCCATATTTTTGGCGCCAGG
CCAAGGGCTTGTTGGCATCCCATG
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