CX305148

Overview
NameCX305148
Unique NameCX305148
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length315
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12725 contig Ccv1_Contig12725:1007..1322. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305148 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.063e-13
Identity = 33/35 (94.29%), Postives = 33/35 (94.29%), Query Frame = -2
Query:  210 AWDDH*IFWAGPFIGAALAALYHQIVIRAIPFKSK 314
            AWDDH IFW GPFIGAALAALYHQIVIRAIPFKSK
Sbjct:  252 AWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKSK 286          
BLAST of CX305148 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.351e-12
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = -2
Query:  210 AWDDH*IFWAGPFIGAALAALYHQIVIRAIPFKSK 314
            +WDDH IFW GPFIGAALAALYHQIVIRAIPFKSK
Sbjct:  252 SWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKSK 286          
BLAST of CX305148 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.304e-12
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = -2
Query:  210 AWDDH*IFWAGPFIGAALAALYHQIVIRAIPFKSK 314
            AWDDH IFW GPFIGAALAALYHQ+VIRAIPFKS+
Sbjct:  251 AWDDHWIFWVGPFIGAALAALYHQLVIRAIPFKSR 285          
BLAST of CX305148 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 3.009e-12
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = -2
Query:  210 AWDDH*IFWAGPFIGAALAALYHQIVIRAIPFKSK 314
            AWDDH IFW GPFIGAALAA+YHQ+VIRAIPFKS+
Sbjct:  253 AWDDHWIFWVGPFIGAALAAIYHQVVIRAIPFKSR 287          
BLAST of CX305148 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.755e-12
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = -2
Query:  210 WDDH*IFWAGPFIGAALAALYHQIVIRAIPFKSK 311
            W+DH IFW GPFIGAALAALYHQ+VIRAIPFKSK
Sbjct:  256 WNDHWIFWVGPFIGAALAALYHQVVIRAIPFKSK 289          
BLAST of CX305148 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.143e-11
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = -2
Query:  210 AWDDH*IFWAGPFIGAALAALYHQIVIRAIPFKSK 314
            AWDDH +FW GPFIGAALAALYH IVIRAIPFKS+
Sbjct:  251 AWDDHWVFWVGPFIGAALAALYHVIVIRAIPFKSR 285          
BLAST of CX305148 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.493e-11
Identity = 28/35 (80.00%), Postives = 33/35 (94.29%), Query Frame = -2
Query:  210 AWDDH*IFWAGPFIGAALAALYHQIVIRAIPFKSK 314
            AW+DH IFW GPFIGAALAA+YHQ++IRAIPFKS+
Sbjct:  254 AWNDHWIFWVGPFIGAALAAIYHQVIIRAIPFKSR 288          
BLAST of CX305148 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.950e-11
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = -2
Query:  210 AWDDH*IFWAGPFIGAALAALYHQIVIRAIPFKSK 314
            AW DH IFW GPFIGAALAA+YHQ++IRAIPFKS+
Sbjct:  257 AWSDHWIFWVGPFIGAALAAIYHQVIIRAIPFKSR 291          
BLAST of CX305148 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.950e-11
Identity = 27/35 (77.14%), Postives = 33/35 (94.29%), Query Frame = -2
Query:  210 AWDDH*IFWAGPFIGAALAALYHQIVIRAIPFKSK 314
            AW+DH IFW GPF+GAALAA+YHQ++IRAIPFKS+
Sbjct:  254 AWNDHWIFWVGPFVGAALAAIYHQVIIRAIPFKSR 288          
BLAST of CX305148 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.327e-11
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = -2
Query:  210 AWDDH*IFWAGPFIGAALAALYHQIVIRAIPFKSK 314
            +WDDH +FW GPFIGAALAALYH +VIRAIPFKS+
Sbjct:  251 SWDDHWVFWVGPFIGAALAALYHVVVIRAIPFKSR 285          
The following BLAST results are available for this feature:
BLAST of CX305148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PIP15_ARATH6.063e-1394.29Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP14_ARATH1.351e-1291.43Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP13_ARATH2.304e-1288.57Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP12_ORYSJ3.009e-1285.71Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP2_PEA8.755e-1288.24Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP12_ARATH1.143e-1185.71Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP12_MAIZE1.493e-1180.00Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP13_MAIZE1.950e-1180.00Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP11_ORYSJ1.950e-1177.14Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP11_VICFA3.327e-1180.00Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC18001G02Rv Drought1 Citrus clementina cDNA clone C18001G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305148 ID=CX305148; Name=CX305148; organism=Citrus clementina; type=EST; length=315bp
TTTTTTTTTTTTTTTTTTTGGACAAGAAACAATAATTTATTTATAATAGG
AATTGGCCATGAACATGTATAGTCATACACAATTCAAGAGCCACAAACAC
CAAGGGTTGTACATATACAGCAGATAATTAAAAGCAAACCCAGTGACAGT
GGGCAATTCAACTCCATACATGGCTATTAATTGAACGGATCGAAATTAAT
GACTAATCATTTGGACTTGAATGGGATGGCCCTGATCACAATCTGATGAT
ATAAAGCTGCAAGCGCTGCTCCAATGAATGGTCCTGCCCAGAAAATTCAA
TGATCATCCCAGGCT
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