CX305197

Overview
NameCX305197
Unique NameCX305197
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length327
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig696 contig Ccv1_Contig696:491..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305197 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.086e-17
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 1
Query:    7 SVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 177
            SVLL++ASL+P F+GVSVESKS   M+SDAE WNGR AMLGLVALAFTEFVKG +LV
Sbjct:  140 SVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of CX305197 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.049e-16
Identity = 36/57 (63.16%), Postives = 51/57 (89.47%), Query Frame = 1
Query:    7 SVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 177
            S +L +A+L+P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALAFTE+VKGG L+
Sbjct:  141 SAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of CX305197 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.287e-14
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = 1
Query:   13 LLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 177
            + +VASL+PL +G SVESKS G  ++DAELWNGRFAMLGLVALA TEF+ G   V
Sbjct:  175 VFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of CX305197 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.421e-11
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 1
Query:   13 LLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 177
            +L++ASLVPL +G S E ++   M ++AELWNGRFAMLGLVALA TE + G   +
Sbjct:  116 VLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          
BLAST of CX305197 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.849e-11
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 1
Query:   13 LLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKG 165
            +L++ASLVPL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G
Sbjct:  111 MLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITG 161          
The following BLAST results are available for this feature:
BLAST of CX305197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ELI_PEA1.086e-1777.19Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL2.049e-1663.16Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU7.287e-1467.27High molecular mass early light-inducible protein ... [more]
ELI9_HORVU4.421e-1156.36Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU9.849e-1158.82Low molecular mass early light-inducible protein H... [more]
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Properties
Property NameValue
Genbank descriptionC18002D07Rv Drought1 Citrus clementina cDNA clone C18002D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305197 ID=CX305197; Name=CX305197; organism=Citrus clementina; type=EST; length=327bp
GCGGGCAGTGTTTTGCTCACGGTTGCGTCCCTGGTTCCTTTGTTTAAAGG
TGTCAGCGTGGAGTCTAAATCGGATGGGTTCATGACTTCGGATGCTGAGT
TGTGGAATGGGAGGTTTGCTATGCTGGGCCTTGTTGCTTTGGCTTTCACC
GAGTTTGTTAAGGGTGGCACCCTTGTTTAAGCTTAATTTTGTTTAGATCT
GTAGATCTGTATTTTTTTTAACTAATTAATGTATGAGATCCTACTGTAAT
TAAATCTCTATTTCTCATGCCATTCTGTAATTCAACCGCCATTTTCTAAA
AAATAAAAAAAAAAAAAAAAAAAAAAA
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