CX305198

Overview
NameCX305198
Unique NameCX305198
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length510
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig422 contig Ccv1_Contig422:190..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX305198 vs. ExPASy Swiss-Prot
Match: NDUS6_ARATH (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6 OS=Arabidopsis thaliana GN=At1g49140 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.770e-26
Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = -3 
Query:  320 IVREKWIDIEKAKIIREKLKWCYRIEGVNHMQKCRHLVNQYLESTRGIGWGKDGRHPSLHGPK 508
            IVREKWI IEKAKI+REK+KWCYR+EGVNH QKCRHLV QYL++TRG+GWGKD R  SLHGPK
Sbjct:   37 IVREKWIHIEKAKILREKVKWCYRVEGVNHYQKCRHLVQQYLDATRGVGWGKDHRPISLHGPK 99
The following BLAST results are available for this feature:
BLAST of CX305198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NDUS6_ARATH2.770e-2680.95NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
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Properties
Property NameValue
Genbank descriptionC18002D08Rv Drought1 Citrus clementina cDNA clone C18002D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305198 ID=CX305198; Name=CX305198; organism=Citrus clementina; type=EST; length=510bp
TTTTTTTTTTTTTTTTTTGCATTATCTGATGTACTTTTCATTTTTTACTC
TGTCCAAATTGCAACCAATATTCAGATGCCAATGCAAAGATCTAAGACGT
AAGCAGAAGCCAGTATCATCTGGCTGCCATATTGAACATAAGAAGATAGG
AAAATAAATAATGTTATAAGTAGACCACAAGACAGAAAACAACAGGCAAA
CAGGAAGATGAACTGGCCCAGCCACTGCTACACTTTAGGCATTCCTCCAC
ATGGCCAAGTGCAATGACCTTATTCATTCCTTAAAAAGATCATCATTCTT
CAGACTCCACAGCCTCCACCTTCGGACCGTGAAGCGAGGGATGCCGGCCG
TCCTTGCCCCAGCCGATGCCGCGAGTGGACTCGAGGTACTGGTTAACGAG
GTGACGGCACTTCTGCATGTGATTAACTCCTTCGATGCGATAGCACCACT
TGAGCTTCTCTCTTATGATCTTCGCCTTCTCGATGTCGATCCACTTCTCC
CTCACTATGT
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