CX305216

Overview
NameCX305216
Unique NameCX305216
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length522
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX305216_ssr462 microsatellite CX305216_ssr462:462..473. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig857 contig Ccv1_Contig857:1..522. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305216 vs. ExPASy Swiss-Prot
Match: ITH5_CUCMA (Inhibitor of trypsin and hageman factor OS=Cucurbita maxima PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.207e-20
Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = 3
Query:  234 CPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVPRIG 431
            CP KSSWP LVG  G VA AIIE++NP V A++L EGTPVT+D+R +RVR+WVNK+G V+  PRIG
Sbjct:    3 CPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRGLVVSPPRIG 68          
BLAST of CX305216 vs. ExPASy Swiss-Prot
Match: BGIA_MOMCH (Glu S.griseus protease inhibitor OS=Momordica charantia PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.376e-15
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 3
Query:  234 CPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVPRIG 431
            C  K SWP+LVG  G  A A+IE+ENP V A+++  G+PVT D+R DRVRVWV ++G V R P IG
Sbjct:    3 CQGKRSWPQLVGSTGAAAKAVIERENPRVRAVIVRVGSPVTADFRCDRVRVWVTERGIVARPPAIG 68          
BLAST of CX305216 vs. ExPASy Swiss-Prot
Match: ICI_LINUS (Proteinase inhibitor OS=Linum usitatissimum PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.003e-15
Identity = 39/65 (60.00%), Postives = 49/65 (75.38%), Query Frame = 3
Query:  234 CPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVPRI 428
            CP K++WPELVGK+G +AAA +E+EN  VHAIVL EG+ +T+D+R DRV V VN  G V  VP I
Sbjct:    4 CPGKNAWPELVGKSGNMAAATVERENRNVHAIVLKEGSAMTKDFRCDRVWVIVNDHGVVTSVPHI 68          
BLAST of CX305216 vs. ExPASy Swiss-Prot
Match: HPI_HEVBR (Protease inhibitor HPI OS=Hevea brasiliensis GN=PI1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.521e-14
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = 3
Query:  225 AFDCPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVPRIG 431
            A  CP K+SWPELVG NG++AA II+ EN  V AIV+ EG P+T+D   +RVRV+V++   V +VP IG
Sbjct:    2 ASQCPVKNSWPELVGTNGDIAAGIIQTENANVKAIVVKEGLPITQDLNFNRVRVFVDENRVVTQVPAIG 70          
BLAST of CX305216 vs. ExPASy Swiss-Prot
Match: ATSI_AMACA (Trypsin/subtilisin inhibitor OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.391e-13
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  225 AFDCPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVPRI 428
            A +CP K  WPELVG+ G  AAAIIE+ENP V +IV  E +  T+D+R DRV V V+  G V+R PR+
Sbjct:    1 ARECPGKQEWPELVGEYGYKAAAIIERENPNVRSIVKHERSGFTKDFRCDRVWVVVDSTGVVVRTPRV 68          
BLAST of CX305216 vs. ExPASy Swiss-Prot
Match: ICI1_SOLPE (Wound-induced proteinase inhibitor 1 OS=Solanum peruvianum PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.090e-12
Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 3
Query:  201 DGPNLV--MSAFD----CPRKSSWPELVGKNGEVAAAIIEKENPCVHAI-VLLEGTPVTRDYRIDRVRVWVNKKGKVIRVPRI 428
            DGP ++  +  F+    C  K  WPEL+G     A  IIEKENP +  I +LL G+PVT+D+R DRVR++VN  G V+++PR+
Sbjct:   28 DGPEVIKLLKEFESDSRCKGKQFWPELIGVPALYAKGIIEKENPSITNIPILLNGSPVTKDFRCDRVRLFVNILGDVVQIPRV 110          
BLAST of CX305216 vs. ExPASy Swiss-Prot
Match: ICID_SOLTU (Wound-induced proteinase inhibitor 1 OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.429e-12
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = 3
Query:  201 DGPNLV--MSAFDCPRKSSWPELVGKNGEVAAAIIEKENPCVHAI-VLLEGTPVTRDYRIDRVRVWVNKKGKVIRVPRI 428
            DGP ++     F+C  K  WPEL+G   ++A  IIEKEN  +  + +LL G+PVT DYR +RVR++ N  G V+++PR+
Sbjct:   28 DGPEVIELQKEFECNGKQRWPELIGVPTKLAKGIIEKENSLITNVQILLNGSPVTMDYRCNRVRLFDNILGDVVQIPRV 106          
BLAST of CX305216 vs. ExPASy Swiss-Prot
Match: ICI1_SOLTU (Proteinase inhibitor 1 OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.507e-11
Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = 3
Query:  201 DGPNLV--MSAFDCPRKSSWPELVGKNGEVAAAIIEKENPCVHAI-VLLEGTPVTRDYRIDRVRVWVNKKGKVIRVPRIG 431
            DGP ++  +  F C  K  WPEL+G   ++A  IIEKEN  +  + +LL G+PVT D R DRVR++ N  G V+ +P +G
Sbjct:   28 DGPEVIQLLKEFQCKGKLRWPELIGVPTKLAKGIIEKENSLISNVHILLNGSPVTLDIRCDRVRLFDNILGYVVDIPVVG 107          
The following BLAST results are available for this feature:
BLAST of CX305216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
ITH5_CUCMA9.207e-2065.15Inhibitor of trypsin and hageman factor OS=Cucurbi... [more]
BGIA_MOMCH1.376e-1556.06Glu S.griseus protease inhibitor OS=Momordica char... [more]
ICI_LINUS4.003e-1560.00Proteinase inhibitor OS=Linum usitatissimum PE=1 S... [more]
HPI_HEVBR1.521e-1455.07Protease inhibitor HPI OS=Hevea brasiliensis GN=PI... [more]
ATSI_AMACA6.391e-1354.41Trypsin/subtilisin inhibitor OS=Amaranthus caudatu... [more]
ICI1_SOLPE1.090e-1245.78Wound-induced proteinase inhibitor 1 OS=Solanum pe... [more]
ICID_SOLTU2.429e-1244.30Wound-induced proteinase inhibitor 1 OS=Solanum tu... [more]
ICI1_SOLTU3.507e-1143.75Proteinase inhibitor 1 OS=Solanum tuberosum PE=3 S... [more]
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Properties
Property NameValue
Genbank descriptionC18002F04Rv Drought1 Citrus clementina cDNA clone C18002F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305216 ID=CX305216; Name=CX305216; organism=Citrus clementina; type=EST; length=522bp
GCGGGGACTTTGCAAAGAGCCTTCGAAATAACAATTAATTATTAGCAATG
AAGAGTTCATTACCAGCACTCGCCCTTTTCTTCTTTCTCTTGGCCTTCGC
CGCAAAACCCTCTTTGGCTGCTCGTCATGAGCCTTGCCTGACCGATGGCA
AGGAGCTTCGCTCTGAAGTCATCGTATCTGCATTGAAAGGAGTTGTGGAA
GATGGACCAAACCTAGTCATGTCTGCATTTGATTGTCCACGCAAGAGCTC
ATGGCCAGAGCTGGTTGGTAAAAACGGGGAGGTTGCTGCTGCTATTATAG
AGAAAGAGAATCCTTGTGTTCATGCAATCGTATTACTTGAGGGAACTCCA
GTTACTCGGGACTATAGGATTGACAGGGTTCGTGTTTGGGTCAACAAGAA
AGGGAAGGTGATTAGGGTTCCTCGTATTGGTTGAATTTCCTCCATCGACT
ATCTCATAACTAATAAATAAATAAATGAAATAAGTGTTGTTGTAGGCTAT
GAGATAATGCATGCTTGGACTA
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