CX305218

Overview
NameCX305218
Unique NameCX305218
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig886 contig Ccv1_Contig886:390..891. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX305218 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 7.232e-11
Identity = 31/83 (37.35%), Postives = 48/83 (57.83%), Query Frame = -2 
Query:  259 LWKVDSYDDP----LIVTGGSEGHPGVETLLNWFKIEKAGNFSYGGVYNIVHCPSVCISCPRRCNKIGVSTKNGVQRLLLVGD 495
            +W++D YD+      +  GG +G+PG ET+ +WFKIE+   F   G Y +V CP+VC SC  +C  +G+      +R L + D
Sbjct:  128 VWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEE---FCGSGFYKLVFCPTVCGSCKVKCGDVGIYIDQKGRRRLALSD 207
The following BLAST results are available for this feature:
BLAST of CX305218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MIRA_RICDU7.232e-1137.35Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
back to top
Properties
Property NameValue
Genbank descriptionC18002F06Rv Drought1 Citrus clementina cDNA clone C18002F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305218 ID=CX305218; Name=CX305218; organism=Citrus clementina; type=EST; length=502bp
CACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAACAGCAAAAGGAT
CACAGGCGGGGTTATTTTTATTCTGTAATAAAGATAAAAGGTTACTAGCC
TGGTCTATTATTTAGAATGATACAGCTAAGTTCATTCATTACGCGGTCAT
TGATATTGCTTCAGCAGCTTCAAAAAACCTTGATATTGCGTTAGCAGCTT
GAAGTAGCCTTGAGCTTTCCTCTGATGGAAAAAACAGAACATTCAAAGCC
GGTTTATGATCACCAACTAAAAGCAGACGTTGAACGCCATTCTTAGTTGA
AACGCCAATTTTGTTGCAGCGTCTAGGACAAGATATACAGACACTCGGAC
AATGGACAATATTGTATACACCACCATATGAAAAATTTCCAGCTTTCTCA
ATCTTAAACCAATTTAGCAACGTTTCAACTCCTGGGTGGCCCTCACTTCC
GCCGGTTACAATTAATGGATCGTCATAGCTATCAACTTTCCACAATGGTT
CC
back to top