CX305260

Overview
NameCX305260
Unique NameCX305260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length534
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig860 contig Ccv1_Contig860:1..535. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305260 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.422e-16
Identity = 45/143 (31.47%), Postives = 78/143 (54.55%), Query Frame = 2
Query:   62 ATTLSFLILALASNSLLVLGTSSVPEPLLDVHGNKVESTLKYYIVSAIWXXXXXXXXXXXXXXXYCPLDVIQLPSDMQNGIELTLSPYNNST-IVRESTDLNLRFSVLLSGRD-YCNEQPLWKVDNYDAASGKWFITTGGLDG 484
            AT +  L+ A  S S      ++   P+LD  G+++++ ++YY++S+I                 CP  V+Q  SD+ NG  +  S  ++   +VR STD+N+ F  +   RD  C+   +W++DNYD ++GKW++TT G+ G
Sbjct:    4 ATAVVLLLFAFTSKSYFFGVANAANSPVLDTDGDELQTGVQYYVLSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPI---RDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKG 143          

HSP 2 Score: 25.0238 bits (53), Expect = 1.422e-16
Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 1
Query:  487 PGAETLLNWVKLEKIG 534
            PG  TL +W K+EK G
Sbjct:  145 PGPNTLCSWFKIEKAG 160          
BLAST of CX305260 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.183e-13
Identity = 46/148 (31.08%), Postives = 72/148 (48.65%), Query Frame = 2
Query:   53 ISLATTLSFLILALASNSLLVLGTSSVPEPLLDVHGNKVESTLKYYIVSAI--WXXXXXXXXXXXXXXXYCPLDVIQLPSDMQNGIELTLSPYN-NSTIVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGH 487
            +SL+      +LA A+N LL     S P P+LD+ G K+ +   YYIV  +                   CP  V+Q   ++ +   L   P N    +VR STDLN+ FS  +  R       +W++D YD ++G++F+T GG+ G+
Sbjct:    7 LSLSFFFVSALLAAAANPLLS-AADSAPNPVLDIDGEKLRTGTNYYIVPVLRDHGGGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPCR--WTSSTVWRLDKYDESTGQYFVTIGGVKGN 151          

HSP 2 Score: 22.7126 bits (47), Expect = 2.183e-13
Identity = 7/15 (46.67%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  484 SPGAETLLNWVKLEK 528
            +PG ET+ +W K+E+
Sbjct:  151 NPGPETISSWFKIEE 165          
BLAST of CX305260 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.281e-11
Identity = 43/121 (35.54%), Postives = 61/121 (50.41%), Query Frame = 2
Query:  134 PEPLLDVHGNKVESTLKYYIVSAIWXXXXXXXXXXXXXXXY-CPLDVIQLPSDMQNGIELTLSPYNN--STIVRESTDLNLRFSVLLSGRDYCNEQPLWKVDNYDAASGKWFITTGGLDGH 487
            P+P++D+ G  V   + Y++VSAIW                 CPL V+Q P D  NG  +  S   N    IV ES DLN++F++ ++    CNE   WKVD +    G W +T GG  G+
Sbjct:    3 PKPIVDIDGKPVLYGVDYFVVSAIWGAGGGGLTVYGPGNKKKCPLSVVQDPFD--NGEPIIFSAIKNVKDNIVFESVDLNVKFNITIN----CNETTAWKVDRFPGVIG-WTVTLGGEKGY 116          
The following BLAST results are available for this feature:
BLAST of CX305260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC1.422e-1631.4721 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU2.183e-1331.08Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA1.281e-1135.54Latex serine proteinase inhibitor OS=Carica papaya... [more]
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Properties
Property NameValue
Genbank descriptionC18003C08Rv Drought1 Citrus clementina cDNA clone C18003C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305260 ID=CX305260; Name=CX305260; organism=Citrus clementina; type=EST; length=534bp
GCGGGGAACGCGCATCAAACAGATATATAGCTTTGAAAACAACAAAATGA
AGATTTCATTAGCAACAACACTCTCTTTCCTTATCCTTGCCTTGGCCTCA
AACTCTTTGTTGGTCTTGGGCACCTCATCAGTTCCTGAACCTCTCCTTGA
TGTCCACGGAAACAAGGTCGAATCCACCCTTAAGTACTACATAGTCTCAG
CCATCTGGGGAGCTGGCGGTGGTGGAGTTAGCCTACACGGTGGCAGAAAC
GGATATTGTCCGCTGGACGTTATCCAGTTACCTTCTGATATGCAAAATGG
AATCGAATTAACACTGTCACCGTATAACAATTCTACAATTGTCCGAGAAT
CCACTGATCTCAACTTGAGATTCTCAGTGTTGCTATCTGGACGTGACTAT
TGTAACGAACAACCGTTGTGGAAAGTTGATAATTATGACGCGGCATCAGG
CAAATGGTTTATAACAACCGGNGGACTTGATGGTCACCTGGAGCTGAAAC
TTTGCTAAATTGGGTTAAGCTTGAGAAAATTGGA
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