CX305538

Overview
NameCX305538
Unique NameCX305538
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length405
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14757 contig Ccv1_Contig14757:693..1097. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305538 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.879e-23
Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = 3
Query:    6 EVIIGEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCSNQRPYDLNLMAQSM 251
            +VIIG W+PSA D  A+RLPG+G+ TNIINGG+ECG+G +S V +RIGF+  +C   G+ PGDNLDC NQR +   L+  +M
Sbjct:  248 DVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 329          
BLAST of CX305538 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.474e-22
Identity = 45/82 (54.88%), Postives = 61/82 (74.39%), Query Frame = 3
Query:    6 EVIIGEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCSNQRPYDLNLMAQSM 251
            +VIIG W+PS+ D  A+RLPG+G+ TNIINGG+ECG+G +S V +RIGF+  +C   G+ PGDNLDC NQR +   L+  +M
Sbjct:  243 DVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 324          
BLAST of CX305538 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.514e-22
Identity = 45/81 (55.56%), Postives = 58/81 (71.60%), Query Frame = 3
Query:    9 VIIGEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCSNQRPYDLNLMAQSM 251
            VIIG W PS++D  A R+PGYG+ TNIINGG+ECGKGWN+ V +RIGF+  +C   G+  G+NLDC NQ P+   +   SM
Sbjct:  244 VIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 324          
BLAST of CX305538 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.601e-22
Identity = 43/73 (58.90%), Postives = 56/73 (76.71%), Query Frame = 3
Query:    6 EVIIGEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCSNQRPY 224
            +V+ G W+PSA D  A RLPGYG+ TN++NGG+ECGKG N  VA+R+GFF  +CG  G+  G+NLDC NQRP+
Sbjct:  170 DVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPF 242          
BLAST of CX305538 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.601e-22
Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = 3
Query:    6 EVIIGEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCSNQRPYDLNLMAQSM 251
            +VIIG W PS +D  A R+PG+GL TNIINGG+ECG+GWN+ V +RIGF+  +C   G+  G+NLDC NQR Y+      SM
Sbjct:  240 DVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDCYNQRSYNNGPSVDSM 321          
BLAST of CX305538 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.554e-22
Identity = 44/82 (53.66%), Postives = 59/82 (71.95%), Query Frame = 3
Query:    6 EVIIGEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCSNQRPYDLNLMAQSM 251
            +VI G W+PS  D  A+R+PG+G+ TNIINGG+ECG G +S V +RIGF+  +CG  G+ PGDNLDC NQR +   L+  +M
Sbjct:  237 DVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTM 318          
BLAST of CX305538 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.248e-21
Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = 3
Query:    6 EVIIGEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCSNQRPYDLNLMAQSM 251
            +VI G W PSA D  A+RLPGYG+ TNIINGG+ECG G ++ V +RIGF+  +C   G+ PGDN+DC NQ+ ++  L+ ++M
Sbjct:  253 DVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDCGNQKSFNSGLLLETM 334          
BLAST of CX305538 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.248e-21
Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = 3
Query:    6 EVIIGEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCSNQRPYDLNLMAQSM 251
            +VI G W+PS  D  A+R+PG+G+ TNIINGG+ECG G +S V +RIGF+  +CG  G+ PGDNLDC NQR +   L+  ++
Sbjct:  235 DVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 316          
BLAST of CX305538 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.128e-21
Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = 3
Query:    6 EVIIGEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCSNQRPYDLNLMAQSM 251
            +VI G W+PS  D  A+R+PG+G+ TNIINGG+ECG G +S V +RIGF+  +CG  G+ PGDNLDC NQR +   L+  ++
Sbjct:  237 DVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 318          
BLAST of CX305538 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.780e-21
Identity = 44/74 (59.46%), Postives = 53/74 (71.62%), Query Frame = 3
Query:    6 EVIIGEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCSNQRPYD 227
            +VI G W PS  D  A R PGYG+ TNI+NGG+ECG G +  VANRIGF+  +CG FGI  G NLDC NQRP++
Sbjct:  257 DVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPFN 330          
The following BLAST results are available for this feature:
BLAST of CX305538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CHI1_TOBAC3.879e-2356.10Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI2_TOBAC1.474e-2254.88Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_GOSHI2.514e-2255.56Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHIT_CARPA5.601e-2258.90Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI1_THECC5.601e-2254.88Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI1_SOLTU9.554e-2253.66Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_TOBAC1.248e-2152.44Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI2_SOLTU1.248e-2152.44Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_SOLTU2.128e-2152.44Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_ORYSJ2.780e-2159.46Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionC18007A03Rv Drought1 Citrus clementina cDNA clone C18007A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305538 ID=CX305538; Name=CX305538; organism=Citrus clementina; type=EST; length=405bp
GCGGGGAAGTCATTATCGGCGAATGGAAACCATCAGCAAATGACGTAAAC
GCCAGCCGGCTTCCGGGATACGGTCTAACCACAAATATAATCAACGGTGG
AATTGAATGTGGCAAAGGTTGGAATAGCTTTGTAGCTAACCGTATTGGGT
TCTTTACCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTGACAATCTT
GATTGCTCCAACCAACGGCCTTATGACCTTAATCTGATGGCACAATCTAT
GTGATCATCATGATCAACGTTTTAGTAAAATAAGCTTAATAAAAGCTACT
TAATAAAAACTTTAGATGTCACACTTGTAGGTGGACAACTAAACTGTTAC
GCTCTTATTGTAAGTAAATTAAATAAGACTGATCCAACATGGATCAATGA
GTCTT
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