CX305547

Overview
NameCX305547
Unique NameCX305547
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length519
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig651 contig Ccv1_Contig651:452..968. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305547 vs. ExPASy Swiss-Prot
Match: LEC5_DOLBI (Lectin DB58 OS=Dolichos biflorus PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.122e-12
Identity = 40/133 (30.08%), Postives = 70/133 (52.63%), Query Frame = 2
Query:    8 NGVSQLAVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVRIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPSSVYVGFTASTG--PDFSESHQVLDWTFTTFPLPSSSLEE 400
            N    +AVE DT+ N  W DP + H+GID+     N  KS+ ++   L +G+  ++ I Y+  T +L   + +       ++   + ++  +P  V +GF+A+TG    ++E+H VL W+F +  LP  S  E
Sbjct:  137 NSAQTVAVEFDTFSNTDW-DPTSRHIGIDV-----NSIKSIRTASWGLANGQNAEILITYNAATSLLVASLVHPSRRTSYIVSERVDITNELPEYVSIGFSATTGLSEGYTETHDVLSWSFAS-KLPDDSTTE 262          
BLAST of CX305547 vs. ExPASy Swiss-Prot
Match: LEC1_DOLBI (Seed lectin subunit I OS=Dolichos biflorus PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.122e-12
Identity = 42/133 (31.58%), Postives = 67/133 (50.38%), Query Frame = 2
Query:    8 NGVSQLAVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVRIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPSSVYVGFTASTG--PDFSESHQVLDWTFTTFPLPSSSLEE 400
            N    +AVE DT+ N  W DP   H+GID+     N  KS+ +   DL +G   ++ I Y+  T +L   + +       ++   + ++  +P  V VGF+A+TG    + E+H VL W+F +  LP  S  E
Sbjct:  137 NSAQTVAVEFDTFSNSGW-DPSMKHIGIDV-----NSIKSIATVSWDLANGENAEILITYNAATSLLVASLVHPSRRTSYILSERVDITNELPEYVSVGFSATTGLSEGYIETHDVLSWSFAS-KLPDDSTAE 262          
BLAST of CX305547 vs. ExPASy Swiss-Prot
Match: LEC_SOYBN (Lectin OS=Glycine max GN=LE1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.078e-12
Identity = 43/136 (31.62%), Postives = 74/136 (54.41%), Query Frame = 2
Query:    8 NGVSQLAVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVRIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPSSVYVGFTASTGPDF-SESHQVLDWTF-TTFPLPSSSLEEQNL 409
            +G   +AVE DT++N +  DP   H+GI++     N  +S+ ++  DL + +  +V I YD  T +L   + Y       ++   + L  ++P  V +GF+A+TG D   ESH VL W+F +  P  SS+++  +L
Sbjct:  148 SGDQVVAVEFDTFRNSW--DPPNPHIGINV-----NSIRSIKTTSWDLANNKVAKVLITYDASTSLLVASLVYPSQRTSNILSDVVDLKTSLPEWVRIGFSAATGLDIPGESHDVLSWSFASNLPHASSNIDPLDL 276          
BLAST of CX305547 vs. ExPASy Swiss-Prot
Match: LRKA2_ARATH (Lectin-domain containing receptor kinase A4.2 OS=Arabidopsis thaliana GN=LECRKA4.2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.550e-11
Identity = 49/137 (35.77%), Postives = 76/137 (55.47%), Query Frame = 2
Query:    5 GNGVSQL-AVELDTYKN-DYWSDPDANHMGIDIANLTSN---PAKSLDSSG------IDLKSGRPIQVRIYYDGWTKILYVYVAYAG---NPLQKLIERPI-LLSETIPSSVYVGFTASTGPDFSESHQVLDWTFTT 370
            GN  + + AVE DT +     +D   NH+G++  +LTS+   P    D+          L+SG PI+  + YDG T+ L + V  A     P++ LI RP+  LS+ +   +YVGFTA+TG D S +H V+ W+F++
Sbjct:  136 GNSTNHVFAVEFDTVQGFKDGADRTGNHIGLNFNSLTSDVQEPVVYYDNEDPNRKEDFPLQSGDPIRAILDYDGPTQTLNLTVYPANLKSRPVRPLISRPVPKLSQIVQEEMYVGFTAATGRDQSSAHYVMGWSFSS 272          
BLAST of CX305547 vs. ExPASy Swiss-Prot
Match: LEC1_MEDTR (Lectin 1 OS=Medicago truncatula GN=LEC1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.550e-11
Identity = 39/118 (33.05%), Postives = 69/118 (58.47%), Query Frame = 2
Query:   14 VSQLAVELDTYKNDYWSDPDAN-HMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVRIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPSSVYVGFTASTGPDFSESHQVLDWTF 364
            +  +AVE+DT+ N +  DP  N H+GI++     N  KS+ ++   L++GR   V + +D  T +L V ++Y G P   ++   + L + +P  V +GF+A+TG +F+E H +  W+F
Sbjct:  146 IQTVAVEIDTFHNTW--DPKINRHIGINV-----NCIKSISTTSWVLENGREANVLVRFDAHTNVLSVVLSYPGLPDSYILSDVVPLKDIVPEWVRIGFSAATGAEFAE-HDIRYWSF 255          
BLAST of CX305547 vs. ExPASy Swiss-Prot
Match: PHAE_PHAVU (Erythroagglutinating phytohemagglutinin OS=Phaseolus vulgaris GN=DLEC1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.024e-11
Identity = 44/132 (33.33%), Postives = 66/132 (50.00%), Query Frame = 2
Query:   23 LAVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVRIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPSSVYVGFTASTG--PDFSESHQVLDWTFTTFPLPSSSLEEQNLA 412
            +AVE DT  N +W DP   H+GID+     N  KS+ ++  D   G   +V I YD  TK+L   + Y       ++   + L   +P  V VGFTA+TG      E++ +L W+F +     ++ E  NLA
Sbjct:  142 VAVEFDTLYNVHW-DPKPRHIGIDV-----NSIKSIKTTTWDFVKGENAEVLITYDSSTKLLVASLVYPSLKTSFIVSDTVDLKSVLPEWVIVGFTATTGITKGNVETNDILSWSFASKLSDGTTSEALNLA 267          
BLAST of CX305547 vs. ExPASy Swiss-Prot
Match: LECS_VATMA (Seed lectin OS=Vatairea macrocarpa PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.452e-11
Identity = 43/127 (33.86%), Postives = 66/127 (51.97%), Query Frame = 2
Query:   14 VSQLAVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVRIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPSSVYVGFTASTG--PDFSESHQVLDWTFT-TFPLPS 385
            +  +AVE DT+ N +  DP A H+GI++     N  +S+       ++G+   V I Y+  TK L   + Y  N    ++   + L   +P  V VGF+A++G   D  E+H VLDW+FT T   PS
Sbjct:  117 IQTVAVEFDTFSNTW--DPSARHIGINV-----NSIESMKYVKWGWENGKVANVYISYEASTKTLTASLTYPSNATSYIVSANVDLKSALPEWVRVGFSATSGLSRDHVETHDVLDWSFTSTLQAPS 236          
BLAST of CX305547 vs. ExPASy Swiss-Prot
Match: LEC_ERYCG (Lectin OS=Erythrina crista-galli PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.691e-11
Identity = 40/121 (33.06%), Postives = 61/121 (50.41%), Query Frame = 2
Query:    8 NGVSQLAVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVRIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPSSVYVGFTASTGP--DFSESHQVLDWTF 364
            N    LAVE DT+ N  W  P   H+GID+     N  +S+ +    L +G+   V I YD  +KIL+V + Y  +     I   + + + +P  V VG + +TG   D +E+H V  W+F
Sbjct:  119 NSYQTLAVEFDTFSNP-WDPPQVPHIGIDV-----NSIRSIKTQPFQLDNGQVANVVIKYDAPSKILHVVLVYPSSGAIYTIAEIVDVKQVLPDWVDVGLSGATGAQRDAAETHDVYSWSF 233          
The following BLAST results are available for this feature:
BLAST of CX305547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
LEC5_DOLBI3.122e-1230.08Lectin DB58 OS=Dolichos biflorus PE=1 SV=2[more]
LEC1_DOLBI3.122e-1231.58Seed lectin subunit I OS=Dolichos biflorus PE=1 SV... [more]
LEC_SOYBN4.078e-1231.62Lectin OS=Glycine max GN=LE1 PE=1 SV=1[more]
LRKA2_ARATH1.550e-1135.77Lectin-domain containing receptor kinase A4.2 OS=A... [more]
LEC1_MEDTR1.550e-1133.05Lectin 1 OS=Medicago truncatula GN=LEC1 PE=3 SV=1[more]
PHAE_PHAVU2.024e-1133.33Erythroagglutinating phytohemagglutinin OS=Phaseol... [more]
LECS_VATMA3.452e-1133.86Seed lectin OS=Vatairea macrocarpa PE=1 SV=1[more]
LEC_ERYCG7.691e-1133.06Lectin OS=Erythrina crista-galli PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC18007B02Rv Drought1 Citrus clementina cDNA clone C18007B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305547 ID=CX305547; Name=CX305547; organism=Citrus clementina; type=EST; length=519bp
GCGGGGTAACGGTGTTTCGCAATTAGCCGTGGAGCTGGACACTTACAAGA
ACGACTACTGGTCTGATCCAGATGCTAACCATATGGGCATTGACATAGCA
AACTTAACATCGAATCCAGCCAAGAGTCTCGACAGCTCTGGTATTGATCT
CAAAAGTGGAAGACCGATCCAGGTTCGCATTTATTACGATGGATGGACGA
AAATACTCTATGTTTATGTGGCATATGCGGGGAACCCACTTCAGAAGCTT
ATTGAAAGACCTATCCTCTTGTCAGAAACAATTCCAAGCTCAGTCTATGT
TGGCTTCACAGCATCCACAGGGCCCGACTTTTCAGAAAGCCATCAGGTGC
TTGATTGGACCTTCACAACGTTCCCATTGCCTTCTTCTTCTCTGGAGGAG
CAAAACCTGGCGATGCCAATATAATTCTAAACCGTCCTTGAAAAACCATG
TCACATAAAAAATTATAATAAATAAAAATAACTAATATCGTCAATAAAGC
GACATGGCTCTAGAAGCTG
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