CX305550

Overview
NameCX305550
Unique NameCX305550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length281
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9835 contig Ccv1_Contig9835:1..276. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX305550 vs. ExPASy Swiss-Prot
Match: PR4A_TOBAC (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.821e-25
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 3
Query:   42 KNMGRFGLCVILSVCLLVTA-ASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWPQKYGWTAFCHSGGPLG 281
            + +  + LCV L +  +V A A+AQSA+NVR+TYHLY+P+ I WDL AASAFCATWDA+KPLAW QKYGWTAFC   GP G
Sbjct:    2 ERVNNYKLCVALLIISMVMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPAGPRG 82          
BLAST of CX305550 vs. ExPASy Swiss-Prot
Match: PR4B_TOBAC (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.058e-25
Identity = 50/81 (61.73%), Postives = 64/81 (79.01%), Query Frame = 3
Query:   42 KNMGRFGLCV-ILSVCLLVTAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWPQKYGWTAFCHSGGPLG 281
            + +  + LCV +L + +++  A+AQSA+NVR+TYHLY+P+ I WDL AASAFCATWDA+KPLAW QKYGWTAFC   GP G
Sbjct:    2 ERVNNYKLCVALLIMSVMMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPAGPRG 82          
BLAST of CX305550 vs. ExPASy Swiss-Prot
Match: PRP2_SOLLC (Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.462e-22
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 3
Query:   63 LCVILSVC-LLVTAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWPQKYGWTAFCHSGGPLG 281
            LCV   V  +++  A+AQSA+NVRATYHLY+P+ I WDL  AS +CATWDA+KPL W ++YGWTAFC   GP G
Sbjct:    7 LCVAFFVINMMMAVAAAQSATNVRATYHLYNPQNINWDLRTASVYCATWDADKPLEWRRRYGWTAFCGPAGPTG 80          
BLAST of CX305550 vs. ExPASy Swiss-Prot
Match: WIN1_SOLTU (Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.064e-21
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 3
Query:   96 TAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWPQKYGWTAFCHSGGPLG 281
            T   + SA NVRATYH+Y+P+ +GWDL A SA+C+TWDANKPL+W +KYGWTAFC   GP G
Sbjct:   73 TPTPSGSAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPLSWRKKYGWTAFCGPVGPRG 134          
BLAST of CX305550 vs. ExPASy Swiss-Prot
Match: WIN2_SOLTU (Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.304e-20
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 3
Query:  114 SASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWPQKYGWTAFCHSGGPLG 281
            SA NVRATYH+Y+P+ +GWDL A SA+C+TWDANKP AW  KYGWTAFC   GP G
Sbjct:   78 SAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPYAWRSKYGWTAFCGPVGPRG 133          
BLAST of CX305550 vs. ExPASy Swiss-Prot
Match: WHW1_WHEAT (Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.144e-19
Identity = 43/75 (57.33%), Postives = 51/75 (68.00%), Query Frame = 3
Query:   63 LCVILSVCLLVTAASAQSASNVRATYHLYHPEQIGWDL--TAASAFCATWDANKPLAWPQKYGWTAFCHSGGPLG 281
            + V+  +C    AA+AQ A+NVRATYH Y P Q  WDL   A SA+CATWDA+KPL+W  KYGWTAFC   G  G
Sbjct:    6 MLVVALLCAAAAAATAQQATNVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHG 80          
BLAST of CX305550 vs. ExPASy Swiss-Prot
Match: HEVL_ARATH (Hevein-like protein OS=Arabidopsis thaliana GN=HEL PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.548e-19
Identity = 39/57 (68.42%), Postives = 44/57 (77.19%), Query Frame = 3
Query:  111 QSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWPQKYGWTAFCHSGGPLG 281
            +SASNVRATYH Y+P Q  WDL A SA+C+TWDA+KP AW  KYGWTAFC   GP G
Sbjct:   72 ESASNVRATYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRG 128          
BLAST of CX305550 vs. ExPASy Swiss-Prot
Match: WHW2_WHEAT (Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.327e-19
Identity = 43/75 (57.33%), Postives = 50/75 (66.67%), Query Frame = 3
Query:   63 LCVILSVCLLVTAASAQSASNVRATYHLYHPEQIGWDL--TAASAFCATWDANKPLAWPQKYGWTAFCHSGGPLG 281
            + V   +C    AA+AQ A+NVRATYH Y P Q  WDL   A SA+CATWDA+KPL+W  KYGWTAFC   G  G
Sbjct:    8 MLVAALLCAAAAAATAQQATNVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHG 82          
BLAST of CX305550 vs. ExPASy Swiss-Prot
Match: HEVE_HEVBR (Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.679e-18
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 3
Query:  114 SASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWPQKYGWTAFCHSGGPLG 281
            SASNV ATYHLY+ +  GWDL AASA+C+TWDANKP +W  KYGWTAFC   GP+G
Sbjct:   69 SASNVLATYHLYNSQDHGWDLNAASAYCSTWDANKPYSWRSKYGWTAFC---GPVG 121          
BLAST of CX305550 vs. ExPASy Swiss-Prot
Match: BARW_HORVU (Barwin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.067e-17
Identity = 38/59 (64.41%), Postives = 43/59 (72.88%), Query Frame = 3
Query:  111 QSASNVRATYHLYHPEQIGWDL--TAASAFCATWDANKPLAWPQKYGWTAFCHSGGPLG 281
            Q A++VRATYH Y P Q  WDL   A SA+CATWDA+KPL+W  KYGWTAFC   GP G
Sbjct:    1 QQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRG 59          
The following BLAST results are available for this feature:
BLAST of CX305550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PR4A_TOBAC1.821e-2564.20Pathogenesis-related protein PR-4A OS=Nicotiana ta... [more]
PR4B_TOBAC4.058e-2561.73Pathogenesis-related protein PR-4B OS=Nicotiana ta... [more]
PRP2_SOLLC2.462e-2260.81Pathogenesis-related protein P2 OS=Solanum lycoper... [more]
WIN1_SOLTU6.064e-2164.52Wound-induced protein WIN1 OS=Solanum tuberosum GN... [more]
WIN2_SOLTU2.304e-2069.64Wound-induced protein WIN2 OS=Solanum tuberosum GN... [more]
WHW1_WHEAT1.144e-1957.33Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1[more]
HEVL_ARATH2.548e-1968.42Hevein-like protein OS=Arabidopsis thaliana GN=HEL... [more]
WHW2_WHEAT3.327e-1957.33Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1[more]
HEVE_HEVBR3.679e-1869.64Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2[more]
BARW_HORVU4.067e-1764.41Barwin OS=Hordeum vulgare PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC18007B05Rv Drought1 Citrus clementina cDNA clone C18007B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX305550 ID=CX305550; Name=CX305550; organism=Citrus clementina; type=EST; length=281bp
GCGGGGGTGCAACGGATAAGTTAAGCTTAGAACATTAAGAGAAAAATATG
GGGAGGTTCGGTCTCTGCGTGATTCTGTCAGTTTGTCTACTGGTGACAGC
TGCTTCTGCCCAAAGTGCTTCTAATGTGAGAGCCACGTATCATCTCTACC
ACCCTGAGCAAATTGGATGGGACTTGACGGCAGCGAGCGCTTTCTGCGCA
ACATGGGATGCCAACAAGCCCTTGGCCTGGCCCCAGAAATATGGCTGGAC
TGCTTTCTGTCATTCGGGCGGACCCCTTGGA
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